Poster presentations

General information for posters

  • The  two poster sessions scheduled within the ECC2022 programme will take place on Monday, 19 Sept. and Tuesday, 20 Sept., from 17:30h to 19:30h. 
  • All posters will be displayed at the room Tramuntana 3 (groundfloor). The presenting authors are required to give their presentation in-person from the conference venue during the session where they have been assigned.
  • Material to fix the posters on the panels will be available in the poster area (double-sided tape).
  • Each poster will be displayed on the day of the poster session only, (either on Monday or Tuesday). The posters should be installed in the morning and removed before 21:00h. Please make sure to take away your poster yourself; leftover posters will be disposed of.
  • The poster boards are adapted to standard A0 poster size / portrait (A0 is 84.1 x 118.9cm ; or 33.1 x 46.8 inches). The maximum size of the poster must be 90 cm wide and 120 cm high. 
  • The posters must include the title, the name of the authors, the affiliations and a contact address. It is recommended to use a font size of at least 24 points to ensure its legibility. All posters must be written in English.
  • The poster authors are invited to upload the PDF of their poster and share it with the rest of the delegates through the conference APP. Further information will be sent to you by email very soon.

ECCB2022 Best Poster Awards

  • The ECCB2022 Best Poster Awards recognises the scientific quality and the communication effectiveness of the posters presented at ECCB2022. The Global Organisation for Bioinformatics Learning, Education and Training (GOBLET) will award the best posters selected by the Posters Committee. 
  • The evaluation criteria considered by the PostersCommittee are:
  1. Scientific quality and contribution of the results in computational biology and bioinformatics.
  2. Visual communication effectiveness (visual attractiveness and structural clarity).
  3. Data sources are open and clearly cited.
  4. Engaging and well-structured presentation pitch.
  5. Participants voting results.

Print shops

Please note that ECCB2022 organisers are not offering printing services. However, posters can be printed at the following copy shops from Sitges, both are at 15 min by walk from Hotel Melià Sitges:

Address: Av. Camí dels Capellans, 20, 08870 Sitges
Phone: +34 93 522 22 93
Opening hours: from Monday to Friday (between 9:00-18:00h)

El pati
Address: Carrer Illa de Cuba, 10, 08870 Sitges
Phone: +34 93 894 76 76
Opening hours: from Monday to Friday, between 9:30-13:30h and 16:30-20:00h; Saturday: between 10:00-13:30h


Posters will be clustered by theme:

  • Data
  • Genes
  • Genomes
  • Proteins
  • Systems
  • Climate Crisis and Health
  • Applications
  • Training

List of posters

  • The date and time of the poster session assigned to you, and the final submission reference number are indicated in the list below.
  • The final reference number of the poster identifies the poster board and the poster session day (for example, P001-T means poster panel 1 and poster session on Tuesday (T) and P032-M means poster panel 032 and poster session on Monday (M).
  • Posters are ordered by topic and then by title. To search for your poster, you need to press the key “Ctrl + F” and introduce your last name, abstract title or EasyChair reference code.
Climate Crisis and Health


Poster NºTitleAuthors
489P001-MA benchmark of library-size bias in correlation for single-cell expression dataSuzanne Jin, Nacho Molina, Ionas Erb and Cedric Notredame
8780P002-MA graph-based knowledge base of multi-layer clinical information for the heart failure diseaseIrina-Afrodita Balaur, Shaman Narayanasamy, Nikolaus Berndt, Muhammad Shoaib, Sarah Nordmeyer, Titus Kühne and Venkata Satagopam
9753P003-MA linear optimization approach for normalization of SARS-CoV-2 vaccination dataSimon Cyrani, Lukas Wenner, Ferdous Nasri and Bernhard Y Renard
3677P004-MA Named Entity Recognition Pipeline for Custom Anonymisation of Clinical Free-text NotesAndreia Rogerio, Christopher Boustred, Anna Need and Francisco Azuaje
8585P005-MA simulation-based approach to normalize county-level vaccination dataLukas Wenner, Simon Cyrani, Simon Knott, Ferdous Nasri and Bernhard Y Renard
9027P006-MA sustainable workflow for MPRA data analysis: MPRAsnakeflowPyaree Mohan Dash, Martin Kircher and Max Schubach
2652P007-MA Text Mining approach for retrieving gene::drug::cancer associations from full-text biomedical literatureElissavet Zacharopoulou, Giorgos Skoufos, Spiros Tastsoglou and Artemis Hatzigeorgiou
6903P008-MA tissue specific post-translational modification (PTM) map of human proteomePathmanaban Ramasamy, Hanne Devos, Lennart Martens and Wim Vranken
9475P009-MAgnodice: indexing experimentally supported bacterial sRNA-RNA interactionsVasiliki Kotsira, Giorgos Skoufos, Athanasios Alexiou, Filippos S. Kardaras, Maria Zioga, Spyros Tastsoglou, Theodosia Charitou, Zacharopoulou Elissavet, Nikos Perdikopanis and Artemis G. Hatzigeorgiou
5437P011-MAnalysis of phenotypes using ontology and word embeddingCanh Nguyen-Duc, Gregor Bucher and Jürgen Dönitz
9368P012-MAnalyzing socio-demographic biases in cellphone mobility data used for COVID-19 contact predictionsConrad Halle, Ferdous Nasri, Jeremias Dötterl, Steven Schulz, Sten Rüdiger and Bernhard Y Renard
8471P013-MAssessing SARS-CoV-2 evolution through the analysis of emerging mutationsAnastasios Mitsigkolas, Nikolaos Pechlivanis and Fotis Psomopoulos
9601P014-MASTERICS: A Tool for the ExploRation and Integration of omiCS dataÉlise Maigné, Céline Noirot, Jérôme Mariette, Yaa Adu Kesewaah, Sébastien Déjean, Camille Guilmineau, Julien Henry, Arielle Krebs, Laurence Liaubet, Fanny Mathevet, Hyphen-Stat, Christine Gaspin and Nathalie Vialaneix
2335P015-MBenchmarking methods for the identification of mislabeled data in genomicsLusine Nazaretyan, Martin Kircher and Ulf Leser
9367P016-MBEstimate: a python tool for in silico analysis of potential edits with CRISPR base editorsCansu Dincer, Matthew Coelho and Mathew Garnett
6790P017-MBLOOD LIPID PROFILE AS AN INDICATOR OF PSYCHIATRIC DISORDERSAnna Tkachev, Anna Morozova, Yana Zorkina, Alexander Reznik, Denis Andreyuk, Elena Stekolshchikova, Nickolay Anikanov, Georgiy Kostyuk and Philipp Khaitovich
5598P018-MBreast Cancer Detection in UKBiobank Data Using Mutation Based Gene Weighting and Deep LearningNuriye Özlem Özcan Şimşek, Fikret Gurgen and Arzucan Ozgur
887P019-MCABiNet – Biclustering and joint cell-gene visualization of single-cell transcriptomicsYan Zhao, Clemens Kohl and Martin Vingron
1222P020-MCan we trust probabilities in deep drug activity models? A comparative calibration study.Hannah Rosa Friesacher, Lewis Mervin H, Ola Engkvist, Yves Moreau and Adam Arany
7934P021-MClustAssess: tools for assessing the robustness of single-cell clusteringIrina Mohorianu, Arash Shahsavari and Andi Munteanu
9217P022-MConcordant or not? Performance and concordance rates analysis of ten prediction algorithms on clinically relevant variants from the BRCA1 and BRCA2 genes.Erda Qorri, Bertalan Takács, Alexandra Gráf, Márton Z. Enyedi, Lajos Pintér, Ernő Kiss and Lajos Haracska
6651P023-MCovid-19 Mutation Incidence Forecasting using Spatio-Temporal Graph Neural NetworksLarissa Hoffaeller, Athar Khodabakhsh and Bernhard Renard
1477P025-MCross-Mapper for Structural Domains (CroMaSt): A workflow for domain family curation through cross-mapping of structural instances between protein domain databasesHrishikesh Dhondge, Isaure Chauvot de Beauchêne and Marie-Dominique Devignes
6701P026-MData and Computing Platform to facilitate NCER-PD (National Center of Excellence in Research in Parkinson’s disease) projectRajesh Rawal, Carlos Vega, Soumyabrata Ghosh, Sascha Herzinger, Kirsten Roomp, Peter Banda, Piotr Gawron, Rejko Krüger, Jens C. Schwamborn and Venkata P. Satagopam
7111P027-MData integration analysis for profiling host-microbiome interactions in non-responsive Celiac disease patients.Laura Judith Marcos-Zambrano, Blanca LaCruz, Viviana Loria-Kohen, Ana Ramirez de Molina and Enrique Carrillo de Santa Pau
516P028-MData Management in GalaxyBeatriz Serrano-Solano and Bjoern Gruening
5126P029-MDereplication with DEREPer: a tool for High Throughput Metabolomics with LC-MS/MSSimone Zorzan, Kjell Sergeant and Sophie Charton
8941P030-MDesigning a Cloud and HPC Based Model&Simulation platform to Investigate Diseases MechanismsMaria Paola Ferri, Laia Codó Tarraubella, Josep Lluis Gelpi Buchaca, Dimitrios Lialios and Francesco Gualdi
6694P031-MDiASPora: A Natural Language Processing platform for automated extraction of microbial phenotype information from scientific articlesArindam Halder, Ziyad Ziyad and Konrad U Förstner
3446P032-MDigital Heart (DHART) Research: A multi-omics resource portal for the cardiac communityEtienne Boileau, Christoph Dieterich, Harald Wilhelmi and Enio Gjerga
3069P033-MdigitalDLSorteR: An R package to deconvolute bulk RNA-Seq from scRNA-Seq dataDiego Mañanes Cayero, Carlos Torroja, Carlos Relaño Ruperez, Inés Rivero García and Fátima Sánchez-Cabo
2820P034-MDisentangling spatial and non-spatial transcriptomic signals: A modified variational auto encoder modelLoïc Chadoutaud, Andrei Zinovyev and Emmanuel Barillot
3428P035-MEfficient and rapid genome profiling of SARS-CoV-2 by covSonarAlice Wittig, Kunaphas Kongkitimanon and Stephan Fuchs
3176P036-MEvaluation of the bioinformatics tumour-control approach in a next-sequencing panel in pediatric leukemiaBeatriz Ruz-Caracuel, Carlos Rodríguez-Antolín, Carmen Rodríguez Jiménez, Sonia Rodríguez Novoa, Victoria Eugenia Fernández Montaño, Victoria Gómez del Pozo, Inmaculada Ibáñez, Javier de Castro, Adela Escudero López and Antonio Pérez-Martínez
2313P037-MEvent segmentation in highly modified Nanopore direct RNA sequencingWiep van der Toorn, Patrick Bohn, Liuwei Wang, Redmond Smyth and Max von Kleist
2776P038-MExploiting Pretrained Biochemical Language Models for Targeted Drug DesignGökçe Uludoğan, Elif Olmez, Nilgün Karalı, Kutlu Ö. Ülgen and Arzucan Ozgur
2008P039-MExploring Chemical Diversity with the Chemical CheckerMartino Bertoni and Patrick Aloy
4497P040-MExploring the development of innate immune responses to infection in early life: A call for data.Mary McCabe, Dr Guillermo Lopez Campos, Dr Helen Groves and Professor Ultan Power
5250P041-MExtending the potential of plasmiR in the cancer microRNA biomarker landscapeMarios Miliotis, Dimitris Grigoriadis, Spyros Tastsoglou, Nikos Perdikopanis, Athanasios Alexiou and Artemis Hatzigeorgiou
1824P042-MFAIR by Design – FAIRification Strategy in Large Data Centric ProjectsSoumyabrata Ghosh, Irina-Afrodita Balaur, Basile Rommes, Kavita Rege, Hanna Ćwiek-Kupczyńska, Wei Gu and Venkata Pardhasaradhi Satagopam
3133P043-MFar tail approximation of non-standard test statistic distributionKrzysztof Mnich, Wojciech Lesiński and Witold Rudnicki
9537P044-MForest-Guided Clustering – Explainability for Random Forest ModelsLisa Barros de Andrade E Sousa, Dominik Thalmeier, Helena Pelin and Marie Piraud
6682P045-MFrom climate defined ecological niches to microbiome diversity and intra-community synergiesDagmara Błaszczyk, Witold Wydmański, Krzysztof Mnich, Valentyn Bezshapkin, Michał B. Kowalski, Alina Frolova, Witold Rudnicki and Paweł P. Łabaj
5192P046-MGene co-occurrence analysis for prediction of unknown gene functionBartosz Baranowski and Krzysztof Pawłowski
3657P047-MGenOptics: An intuitive platform of visual analytics for integrative analysis of large-scale multi-omics dataKonstantinos A. Kyritsis, Nikolaos Pechlivanis, Angeliki Magklara, Anastasia Kougioumtzi, Panagiotis Dafopoulos, Eleni Ntzioni, Efstathia Tsarouchi, Dimitris Sakellariou, Marios Kotoulas, Stratos Arampatzis, Panagiotis Chatzikamaris, Elisavet Siomou, Maria Argyraki, Dimitrios Botskaris, Iannis Talianidis, Fotis Psomopoulos and Vasileios Vasileiou
7430P048-MGWAS Central: a resource for the discovery and comparison of summary-level genome-wide association study dataTim Beck, Tom Shorter, Thomas Rowlands and Anthony Brookes
4582P049-MIDEAS: Integrative and Differential Expression and Alternative Splicing AnalysisLeonie Pohl, Armin Hadziahmetovic, Alexandra Schubö and Ralf Zimmer
7425P050-MIdentifying Viral miRNAs with Text Mining at the example of SARS-CoV-2 (VIM-TM)Markus Joppich, Armin Hadziahmetovic, Alexandra Schubö and Ralf Zimmer
735P051-MImaging Data: Adding a new type of annotations to 3DBionotes-WSCarolina Simón Guerrero, Jose Ramon Macias, Erney Ramírez-Aportela, Jose Luis Vilas Prieto, Marta Martinez Gonzalez, Carlos Oscar Sanchez Sorzano and Jose Maria Carazo
2650P052-MImpact of preprocessing in data integration of single-cell RNA-seq dataYoungjun Park and Anne-Christin Hauschild
5575P053-MIMPaCT-Data Biomedical Cloud: An initial iteration for a federated virtual computing environment in the context of Precision Medicine in Spain.María Chavero-Díez, Jose María Fernández, Laia Codó, Lidia Lopez, Salvador Capella-Gutierrez, Josep Lluis Gelpi and Impact-Data Wp Two
4179P001-TImplementing best practices for setting a bioinformatics core facilityPau Marc Muñoz Torres, Merce Alemany-Chavarria and Lara Nonell
668P002-TIndication expansion via geometric scattering-based knowledge graph embeddingDhananjay Bhaskar, Sergio Picart-Armada and Smita Krishnaswamy
4669P003-TInSoLiTo: The research software graph-based network from OpenEBenchSergi Aguiló-Castillo, José M. Fernández, Josep Ll. Gelpí and Salvador Capella-Gutierrez
7551P004-TIntegration of multi-omics data using graph neural networks to identify and contextualize biomarker genes for psychiatric disordersSvitlana Oleshko, Francesc Fernández-Albert, Matthias Heinig, Sergio Picart-Armada and Annalisa Marsico
4287P005-TIntegrative network analysis interweaves the missing links in cardiomyopathy diseasomePankaj Chauhan and Ramanathan Sowdhamini
9486P006-TIntroducing the National Research Data Infrastructure for the Research of Microbiota (NFDI4Microbiota)Adrian Fritz, Anke Becker, Peer Bork, Thomas Clavel, Ulisses Nunes da Rocha, Konrad U. Förstner, Alexander Goesmann, Barbara Götz, Manja Marz, Jörg Overmann, Carmen Paulmann, Kristin Sauerland, Alexander Sczyrba, Jens Stoye and Alice C. McHardy
3603P007-TIt’s FLAN time! Summing feature-wise latent representations for interpretabilityAn-Phi Nguyen, Stefania Vasilaki, Maria Rodriguez Martinez and Alice Driessen
9983P008-TLatent Variable Random Forest for Enhanced Feature ImportanceMelpomeni Kasapi, Kexin Xu, James S. Ware, Declan P. O’Regan, Timothy M.D. Ebbels and Joram M. Posma
2496P009-TLCRBert: word embedding to support detection of articles containing low-complexity regionsSylwia Szymańska and Aleksandra Gruca
6322P010-TLight-weight alignment enables fast and accurate metagenome and metatranscriptome quantificationShuba Varshini Alampalli, Eva Weiss and Lars Barquist
1524P011-TLow Complexity Regions in kinasesJoanna Ziemska-Legięcka, Aleksandra Gruca and Marcin Grynberg
2618P012-TMachine learning for extraction of biochemical reactions from the scientific literature​Blanca Cabrera Gil, Anne Morgat, Venkatesh Muthukrishnan, Elisabeth Coudert, Kristian Axelsen, Nicole Redaschi and Alan Bridge
2392P013-TMachine learning identifies weak prognostic signal in colorectal polyp’s transcriptomeRussell Hung, Simon Fisher, Ditte Andersen, Gerard Lynch, Noori Maka, Jennifer Hay, Jakub Jawny, William Sloan, Stephen McSorley, Joanne Edwards and Ian Poole
3126P014-TMicrobial co-occurrence network reveals climate and geographic patterns for soil diversity on the planetNikolaos Pechlivanis, George Karakatsoulis, Stefanos Sgardelis, Ilias Kappas and Fotis Psomopoulos
9758P015-TMitigating failure modes of molecular optimization using expert constraints and ensemblesAdam Arany, Jaak Simm, Natalia Dyubankova, Jonas Verhoeven, Martijn Oldenhof and Yves Moreau
4336P016-TMTLSurv: Predicting Breast Cancer Patients’ Survival with Multimodal Deep Neural Networks and Modality-Specific Transfer LearningSören Richard Stahlschmidt, Göran Falkman, Benjamin Ulfenborg and Jane Synnergren
391P017-TMulti-omics lung cancer subtyping by machine learning informs biomarker-guided drug developmentSven-Eric Schelhorn
1284P018-TNamco: A microbiome explorerMonica Matchado, Alexander Dietrich, Maximilian Zwiebel, Benjamin Ölke, Michael Lauber, Ilias Lagkouvardos, Beate Brandl, Thomas Skurk, Jan Baumbach, Hans Hauner, Dirk Haller, Sandra Reitmeier and Markus List
344P019-Tnf-core as the standard for BovReg reference pipelinesJose Espinosa-Carrasco, Björn E. Langer, Philip A. Ewels, Harshil Patel, Peter Harrison and Cedric Notredame
3007P020-TNightingale, visualizing biology on the web following standardsAurélien Luciani, Gustavo Salazar, Daniel Rice, Swaathi Kandasaamy and Maria Martin
8104P021-TOmics data integration with Correlation guided Network Integration (CoNI)José Manuel Monroy Kuhn, Sonja C. Schriever, Viktorian Miok, Andreas Peter, Martin Heni, Paul T. Pfluger and Dominik Lutter
4024P022-TPanomicon, allowing heterogeneous multi-omics analysis on the webRodolfo Allendes, Johan T. Nystroem-Persson, Yuji Kosugi, Kenji Mizuguchi and Yayoi Natsume-Kitatani
3840P023-TPascalX: Detecting shared genes and pathways between pairs of GWAS traitsDaniel Krefl and Sven Bergmann
7557P024-TPilot: Making Research Data FAIRChristina Yung, Moyez Dharsee, Fan Dong, Kenneth Evans, Susan Evans, Tom Gee, Mojib Javadi, Stephane Pollentier and Shahab Shahnazari
9515P025-TPredicting Gene Dependencies using Machine Learning from Proteomic DataRobert Nkwo, Shirin Khorsandi and Pedro Cutillas
4977P026-TPROMPT: Toward PRecisiOn Medicine for the Prediction of Treatment response in major depressive disorder through stratification of combined clinical and -omicsJúlia Perera-Bel, Alessandra Minelli, Johannes Zang, Britta Kelch, María Martínez de Lagrán, Mara Dierssen, Bernardo Carpiniello, Massimo Gennarelli, Filip Rybakowski, Marie-Claude Potier, Ferran Sanz and Bernhard T Baune
6121P027-TRDMkit: the ELIXIR Research Data Management KitLaura Portell Silva and Munazah Andrabi
514P028-TRecommendations on training VAEs on TCGA transcriptome dataMostafa Eltager, Tamim Abdelaal, Mohammed Charrout, Ahmed Mahfouz, Marcel Reinders and Stavros Makrodimitris
1565P029-TRhea, a FAIR resource of expert curated biochemical and transport reaction data.Parit Bansal, Anne Morgat, Kristian Axelsen, Venkatesh Muthukrishnan, Elisabeth Coudert, Lucila Aimo, Nevila Hyka-Nouspikel, Elisabeth Gasteiger, Arnaud Kerhornou, Teresa Neto, Monica Pozzato, Marie-Claude Blatter, Nicole Redaschi and Alan Bridge
7249P031-TscDAVIS: Single-cell Data Analysis and VISualizationCarlos Torroja, Daniel Jimenez Carretero, Jon E. Sicilia, Juan L. Onieva Zafra, Jorge G. Garcia Gomez, Celia Centeno Tundidor and Fatima Sanchez-Cabo
4681P032-TShort read de novo transcriptome assembly by means of ant colony optimizationKarl Johan Westrin, Olof Emanuelsson and Henric Zazzi
5590P033-TSingle-cell transcriptomic analyses reveal distinct B cell subsets and their class-switch recombination dynamicsJoseph Ng, Alexander Stewart, Deborah Dunn-Walters and Franca Fraternali
1319P034-TSoftware ObservatoryEva Martin del Pico, Salvador Capella-Gutiérrez and Josep Ll Gelpi
8028P035-TSQANTI3: how to curate a Long Read-defined transcriptome in 3 steps.Francisco J. Pardo-Palacios, Ángeles Arzalluz Luque and Ana Conesa
4554P036-TSQANTISIM: a simulator of controlled novelty and degradation of transcripts sequenced by long-readsJorge Mestre-Tomás, Francisco J. Pardo-Palacios and Ana Conesa
8216P037-TStandardized analysis of complex RNAseq experiments using SnakemakeChristian M. Heyer, Ashik Ahmed Abdul Pari, Hellmut G. Augstin and Matthias Schlesner
9659P038-TSystematic benchmarking and error evaluation of basecallers for Nanopore Direct RNA-seqWang Liu-Wei, Patrick Bohn, Wiep van der Toorn, Redmond Smyth and Max von Kleist
1507P039-TTemporal changes in microbiome composition after FMT in subject with Clostridioides difficile infection: a network perspectiveMarco Cappellato, Massimo Bellato, Giacomo Baruzzo, Sonia Facchin, Luisa Barzon, Valeria Besutti, Paola Brun, Simone Del Favero, Luca Schenato, Edoardo Vincenzo Savarino, Ignazio Castagliuolo and Barbara Di Camillo
9141P040-TText mining resources for extracting genetic and phenotypic data from scientific publication full-texts and tablesThomas Rowlands, Janet Pinero, Pablo Accuosto, Tom Shorter, Joram Posma, Laura Furlong and Tim Beck
5144P041-TThe Wisdom of the Crowd: comparing individual and aggregated solutions for metagenomics-based inflammatory bowel disease diagnostics in the scope of the sbv IMPROVER MEDIC challengeLusine Khachatryan, Carine Poussin, Yang Xiang, Adrian Stan, James Battey, Giuseppe Lo Sasso, Stephanie Boue, Nicolas Sierro, Nikolai Ivanov and Julia Hoeng
6028P042-TtolKG: A Linked Knowledge Graph using NLP for Immune Regulatory Cells  Ayesha Sahar, Phillip Lord, Catharien Hilkens, Michael Hughes and Lee Harland
3534P043-TTowards a knowledge graph for pre-/probiotics and microbiota-gut-brain axis diseasesTing Liu, Gongjin Lan, K. Anton Feenstra, Zhisheng Huang and Jaap Heringa
2669P044-TTowards a more inductive world: A review on graph embedding methods for drug repurposing approachesJesús De la Fuente, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Oier Azurmendi-Senar, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert and Mikel Hernaez
4041P045-TTowards interpretable machine learning applications in human microbiome via information theory-guided feature selectionValentyn Bezshapkin, Witold Wydmański, Krzysztof Mnich, Michał Kowalski, Dagmara Błaszczyk, Tomasz Kościółek, Witold Rudnicki and Paweł Łabaj
7217P046-TTransmorph: A computational framework for dataset integrationAziz Fouché, Loïc Chadoutaud and Andrei Zinovyev
9854P047-TtRNAstudio: facilitating the study of human tRNA-seq datasetsMarina Murillo Recio, Adrian Gabriel Torres and Lluís Ribas de Pouplana
214P048-TUsing Statistical and Machine Learning Models to Identify Features Contributing to Class Switch RecombinationLutecia Servius, Joseph Chi-Fung Ng, Davide Pigoli and Franca Fraternali
3523P049-TVIROMEdash: Global Virome Sequence Metadata VisualizerEyyüb Ünlü and Mohammad A. Khan
5367P050-TWorkflowHub: a FAIR registry for workflowsCarole Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Alan Williams, Ignacio Eguinoa, Bert Droesbeke, Hervé Ménager, Laura Rodríguez Navas, José Maria Fernández González, Salvador Capella-Gutierrez, Michael R. Crusoe, Björn Grüning, Simone Leo, Luca Pireddu, Johan Gustafsson, Phil Ewels and Frederik Coppens
Climate Crisis and Health


Ref.Poster NºTitleAuthors
4005P054-MA gene expression signature for survival and risk prediction of Breast Cancer that improves the signatures used in clinical genomic platformsSantiago Bueno-Fortes, Alberto Berral-Gonzalez, Jose M Sanchez-Santos, Manuel Martin-Merino and Javier De Las Rivas
4414P055-MA knowledge graph approach for interpretable prediction of pathogenic genetic interactionsAlexandre Renaux, Chloé Terwagne, Michael Cochez, Ilaria Tiddi, Ann Nowé and Tom Lenaerts
1633P056-MA multi cohort analysis workflow for RNA-seq dataXinhui Wang, Soumyabrata Ghosh and Venkata Satagopam
1429P057-MA New Method for Discovering Drivers Made of Epistatic Gene Pairs in Cancer TumorsJairo Rocha, Jaume Sastre Tomas, Victor Asensio-Landa, Emilia Amengual-Cladera, Jessica Hernandez-Rodriguez, Damià Heine-Suñer and Emidio Capriotti
571P058-MA spatial and single-cell transcriptomics approach to investigate scleroderma in human fibroblasts.Till Baar, Ann-Helen Rosendahl, Katrin Schönborn, Niklas Kleinenkuhnen, Beate Eckes, Pia Moinzadeh, Thomas Krieg and Achim Tresch
9492P059-MA state-of-the-art and easy-to-use Python framework for plant phenotype predictionFlorian Haselbeck, Maura John and Dominik Grimm
3485P060-Macorde unravels functionally interpretable networks of isoform co-usage from single cell dataÁngeles Arzalluz-Luque, Sonia Tarazona and Ana Conesa
5350P061-MAllele-specific copy-number based deconvolution of bulk tumour RNA sequencing data from the TRACERx studyCarla Castignani, Jonas Demeulemeester, Elizabeth Larose Cadieux, Robert E. Hynds, Stefan C. Dentro, Tracerx Consortium, Charles Swanton and Peter Van Loo
4791P062-MAnalysis of differential cellular communication from single cell RNA-seq data with scSeqCommGiulia Cesaro, Giacomo Baruzzo and Barbara Di Camillo
8446P063-MAnalysis of transposable elements in R and Bioconductor with atenaBeatriz Calvo-Serra and Robert Castelo
923P064-MAPPRIS: selecting functionally important isoformsDaniel Cerdán-Vélez, Jose Manuel Rodríguez, Fernando Pozo, Tomás Di Domenico, Jesús Vázquez and Michael Tress
7258P065-MBamQuery: A new proteogenomic tool to explore the ImmunopeptidomeMaria Virginia Ruiz Cuevas, Marie-Pierre Hardy, Anca Apavaloaei, Sebastien Lemieux, Claude Perreault and Gregory Ehx
9004P066-MBenchmarking methods for detecting differential states between conditions from multi-subject single-cell RNA-seq dataSini Junttila, Johannes Smolander and Laura Elo
3777P067-MBeyondcell 2.0: dissecting therapeutic heterogeneity in spatial single-cell RNA-seq dataMaría José Jiménez-Santos, Coral Fustero-Torre, Santiago García-Martín, Carlos Carretero-Puche, Luis García-Jimeno, Tomás Di Domenico, Gonzalo Gómez-López and Fátima Al-Shahrour
8338P068-MCancer signatures for reproducible gene expression analysis data: the computational way to achieve precision medicineStefania Pirrotta, Laura Masatti, Fabiola Pedrini, Chiara Romualdi and Enrica Calura
7003P069-MCell type specificity of Hi-C interaction network topology and gene expression patternsJuris Viksna, Lelde Lace, Gatis Melkus, Peteris Rucevskis, Edgars Celms, Sandra Silina and Andrejs Sizovs
7568P070-MCell type-specific gene co-expression modules and expression signatures define tumor heterogeneity in melanoma patientsLars Bosshard, Franziska Singer and Michael Prummer
8917P071-MComparative study of dynamic changes in gene expression profiles induced by PPARa ligandsYayoi Natsume-Kitatani, Ken-Ichi Aisaki, Satoshi Kitajima and Jun Kanno
3318P072-MComparison of Deconvolution Techniques for Spatially Resolved Transcriptomics DataCarolin Walter, Sarah Sandmann, Ada Anike Pohlmann, Alina Sophie Disch, Kornelius Kerl and Julian Varghese
5089P073-MComputational analysis of differential splicing and transcript alternations in severe COVID-19 infectionSunanda Biswas Mukherjee and Milana Frenkel-Morgenstern
7921P074-MComputational Mapping of the Human-SARS-CoV-2 Protein-RNA InteractomeMarc Horlacher, Svitlana Oleshko, Yue Hu, Giulia Cantini, Patrick Schinke, Mahsa Ghanbari, Ernesto Elorduy Vergara, Florian Bittner, Nikola Mueller, Uwe Ohler, Lambert Moyon and Annalisa Marsico
2063P075-MComputational method prioritising gene-specific cis-regulatory elements reveals new aspects of transcriptional regulation in B cellsAmber Emmett, Matthew Care, Amel Saadi, Gina Doody, Reuben Tooze and David Westhead
6206P076-MconsICA: a package for reference-free deconvolution reveals oncogenic processes in “omics” data and highlights the benefits of multimodal data analysis for patient stratificationMaryna Chepeleva, Tony Kaoma, Aliaksandra Kakoichankava, Yue Zhang, Reka Toth and Petr Nazarov
9701P077-MContext-Aware Transcript Discovery and Quantification from Long Read RNA-Seq data with BambuYing Chen, Andre Sim, Yuk Kei Wan, Keith Yeo, Michael Love and Jonathan Goeke
9675P078-MCurare and GenExVis: A toolkit for analyzing and visualizing RNA-Seq dataPatrick Blumenkamp, Raphael Müller and Alexander Goesmann
5308P079-MDe novo gene evolution in bacteria: a case study of taxonomically restricted genes in BacillusWojciech Karlowski, Deepti Varshney and Andrzej Zielezinski
2017P080-MdecoupleR: ensemble of computational methods to infer biological activities from omics dataPau Badia i Mompel and Julio Saez-Rodriguez
2421P081-MDiana – ROOT: A categorization tool related to the Region Of Origin biotype.Nikos Perdikopanis, Georgios Georgakilas and Artemis Hatzigeorgiou
8223P082-MDifferential Abundance analysis of microbiome data: which tool and how to choose it?Marco Cappellato, Giacomo Baruzzo and Barbara Di Camillo
6704P083-MDisentangling Cellular Heterogeneity with Multimodal single-cell IntegrationJules Samaran, Gabriel Peyré and Laura Cantini
4897P084-MDissecting the impact of genetic variants on transcriptional and post-transcriptional gene regulationAnneke Brümmer and Sven Bergmann
4266P085-MDiving into tumor heterogeneityMarina Mendiburu-Eliçabe, Adrián Blanco-Gomez, Diego Alonso-Lopez, Roberto Corchado-Cobos, Natalia García-Sancha, Sonia Castillo-Lluva, Andrés Castellanos-Martín, María del Mar Sáez-Freire, Julie Milena Galvis-Jiménez, Alejandro Jiménez-Navas, Manuel Jesús Pérez-Baena, Asunción García-Sánchez, María Isidoro Martín, Martin Pérez-Andrés, Alberto Orfao, Jian-Hua Mao, Javier De Las Rivas and Jesús Pérez Losada
785P086-MEmbedPVP: Prioritizing causative variants by integrating functional embedding and biological annotations for genesAzza Althagafi and Robert Hoehndorf
5199P087-MEmpiReS: Differential Analysis of Gene Expression and Alternative SplicingGergely Csaba, Evi Berchtold, Armin Hadziahmetovic, Markus Gruber, Constantin Ammar and Ralf Zimmer
776P088-MEvolclustDB: exploring eukaryotic gene clusters with evolutionary conserved synteny.Uciel Chorostecki, Marina Marcet-Houben, Ismael Collado-Cala, Andrés Garisoain-Zafra, Diego Fuentes Palacios and Toni Gabaldón
4617P089-MExploring mRNA isoform diversity in mouseAgata Muszyńska, Ryszard Przewłocki and Paweł P. Łabaj
6340P090-MExploring the functional landscape of soft tissue sarcomaMiriam Payá-Milans, María Peña-Chilet, Carlos Loucera, Marina Esteban-Medina and Joaquín Dopazo
8920P091-MGAZE: A single-cell gene regulatory inference framework from transcriptomics and epigenomics dataShamim Ashrafiyan, Fatemeh Behjati Ardakani, Dennis Hecker and Marcel Schulz
6749P092-MGenetic determinants of blood transcript splicing and impact on molecular phenotypes in 4732 healthy individualsAlex Tokolyi, Elodie Persyn, Katie Burnham, Artika Nath, Jonathan Marten, David Roberts, Emanuele Di Angelantonio, John Danesh, Adam Butterworth, Mike Inouye, Dirk Paul and Emma Davenport
4093P093-MGenome-wide high-resolution identification of regulatory small RNAs in bacteria based on hybrid transcriptome sequencing dataMuhammad Elhossary, Konrad Förstner, Lauren Walling, Kai Papenfort and Gisela Storz
9501P094-MHigh-dimensional Differential ExplorerFelix Offensperger, Markus Joppich and Ralf Zimmer
6723P095-MIdentification and characterization of aneuploid cells applied to 5q deleted Myelodysplastic SyndromesGuillermo Serrano, Aintzane Díaz, Nerea Berastegui, Marina Ainciburu, Sofia Huerga, José María Lamo de Espinosa, Mikel San Julián, Pamela Acha, Tamara Jimenez, Antonieta Molero, Maria J. Montoro, María Díez-Campelo, David Valcarcel, Francesc Sole, Teresa Ezponda, Mikel Hernaez and Felipe Prosper
7881P096-MIdentification of biomarkers associated with cisplatin resistance in testicular germ cell tumoursDominik Hadzega, Xavier Tominisec Vandoren, Katarina Kalavska, Silvia Schmidtova, Lucia Kucerova, Michal Chovanec, Petra Nemcova, Gabriel Minarik, Lubos Klucar and Michal Mego
3222P097-MIdentification of novel RNA Switches using inverse RNA foldingSumit Mukherjee and Danny Barash
9605P051-TImproving genome annotations with RNA-seq data: a scalable and reproducible workflow for Transcripts And Genes Assembly, Deconvolution, Analysis (TAGADA).Cyril Kurylo, Cervin Guyomar, Sarah Djebali and Sylvain Foissac
5166P052-TInferring aberrant expression dynamics across early myeloid differentiation to discover potential therapeutic targets in myelodysplastic syndromesAintzane Díaz-Mazkiaran, Jesús De la Fuente, Guillermo Serrano, Paula Garcia-Olloqui, Nerea Berastegui, Marina Ainciburu, Ana Alfonso, Amaia Vilas-Zornoza, Patxi San Martin, Jose Lamo de Espinosa, Mikel San-Julian, Pamela Acha, Francesc Solé, Tamara Jimenez, Félix López, María Díez-Campelo, Antonieta Molero, María Julia Montoro, David Valcarcel, Teresa Ezponda, Mikel Hernaez and Felipe Prósper
2516P053-TInfluence of Topologically Associating Domains on gene expression variationPatrycja Rosa and Aleksander Jankowski
3597P054-TIntegrating multi-omics and biophysical data to explore cellular responses against phenolic compounds in yeastNatalia Coutuouné, Rafael Boni, Cleyton Biffe, Ingrid Barcelos, Silvana Rocco, George Jackson de Moraes Rocha and Leandro Vieira dos Santos
4222P055-TInvestigating the Transcriptome of Adenomatous Colorectal Polyps in the Context of Metachronous RecurrenceSimon Fisher, Russell Hung, Ditte Andersen, Gerard Lynch, Noori Maka, Jennifer Hay, Jakub Jawny, William Sloan, Stephen McSorley, Joanne Edwards and Ian Poole
7490P056-TIsoAnnot: a pipeline for functional annotation of isoformsAlessandra Martínez Martín, Francisco Jose Pardo-Palacios, Pedro Salguero, Ángeles Arzalluz-Luque, Lorena de la Fuente Lorente and Ana Conesa
6084P057-TK-nearest neighbour correction for confounding effects in gene expression measurementsFranco Simonetti, Macarena Alonso, Cristina Marino Buslje, Saikat Banerjee and Johannes Soeding
2598P058-TLung tissue multi-layer network in Chronic Obstructive Pulmonary DiseaseNúria Olvera, Jon Sánchez, Iker Núñez, Guillaume Noell, Sandra Casas, Alejandra Lopez, Angela Guirao, Rosalba Lepore, Davide Cirillo, Àlvar Agustí, Alfonso Valencia and Rosa Faner
7319P059-TMachine leaning on whole blood RNAseq identifies interferon-regulated genes as key drivers in thrombotic primary Antiphospholipid syndromeKleio-Maria Verrou, Petros Sfikakis and Maria Tektonidou
6414P060-TMachine learning for improved immune cell type classification as a basis to better understand effects of cell type specific interferon stimulationBogac Aybey, Benedikt Brors, Sheng Zhao and Eike Staub
5385P061-TThe landscape of expression and alternative splicing variation across human traitsRaquel Garcia-Perez, Jose-Miguel Ramirez and Marta Mele
249P062-TMacrophage subpopulations identification using single-cell RNA sequencing dataMercè Alemany-Chavarria, Marta Lalinde, Joaquín Arribas and Lara Nonell
5511P063-TMolecular and functional atlas of sex-differences in multiple sclerosis subtypes analising single cell and single nucleus transcriptomic dataIrene Soler-Sáez, Zoraida Andreu, José Francisco Català-Senent, Rubén Grillo-Risco, Adolfo López-Cerdán, Almudena Neva-Alejo, Borja Gómez, Héctor Carceller, María de la Iglesia-Vayá, Marta R. Hidalgo and Francisco García-García
2566P064-TMolecular mechanisms governing CAR-T cell response in MM patients at single cell levelLorea Jordana, Guillermo Serrano, María Erendira Calleja, Patxi San Martín-Úriz, Amaia Vilas-Zornoza, Asier Ullate-Agote, Aintzane Zabaleta, Diego Alignani, Aina Oliver-Caldes, Marta Español-Rego, Mariona Pascal, Teresa Lozano, Bruno Paiva, Susana Inoges, Ascension Lopez-Diaz de Cerio, Juan Jose Lasarte, Carlos Fernadez de Larrea, Mikel Hernaez, Juan Roberto Rodriguez-Madoz and Felipe Prosper
7780P065-TNetRank Recovers Known Cancer Hallmark Genes as Universal Biomarker Signature for Cancer Outcome PredictionAli Al-Fatlawi and Michael Schroeder
2273P066-TNew genes and splicing isoforms revealed with native RNA in fission yeastJosé Carlos Montañés, M. Mar Albà, Marta Huertas, Simone G. Moro, Williarm R. Blevins, Mercè Carmona, José Ayte and Elena Hidalgo
8488P067-TOptimal Transport improves cell-cell similarity inference in single-cell omics dataGeert-Jan Huizing, Gabriel Peyre and Laura Cantini
2295P068-TPower analysis of cell-type deconvolution across human tissuesAnna Vathrakokoili Pournara, Zhichao Miao and Irene Papatheodorou
2797P069-TPredicting off-target effects of antisense oligomers targeting bacterial mRNAs with the MASON webserverJakob Jung, Linda Popella, Phuong Thao Do, Patrick Pfau, Jörg Vogel and Lars Barquist
9109P070-TPredicting Transcription Factors Biological Roles in P. vulgarisLiudmyla Kondratova, Eduardo Vallejos and Ana Conesa
7406P071-TRational design of a novel respiratory syncytial virus reporter of early events of its viral cycleMarcio Andrés De Ávila, Jose Luis Villarreal Camacho, Christian Cadena, Leidy Hurtado Gómez, Laura Piñeres Santos, Amner Muñoz Acevedo and Homero San Juan Vergara
2065P072-TRBPNet: Predicting Protein-RNA Interaction via CLIP-Seq Sequence-to-Signal LearningMarc Horlacher, Nils Wagner, Marco Salvatore, Julien Gagneur, Lambert Moyon, Ole Winther and Annalisa Marsico
3809P073-TReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experimentsFayrouz Hammal, Benoit Ballester, Pierre De Langen, Fabrice Lopez and Aurélie Bergon
256P074-TrfPhen2Gen: A machine learning based association study of brain imaging phenotypes to genotypesMuhammad Ammar Malik, Alexander Selvikvåg Lundervold and Tom Michoel
8576P075-TRNA-seq analysis: primary breast tumour and circulating tumour cellsDominik Hadzega, Gabriel Minarik, Andrea Soltysova, Petra Nemcova, Katarina Kalavska, Marian Karaba, Juraj Benca, Tatiana Sedlackova, Daniel Pindak, Lubos Klucar and Michal Mego
6040P076-TSex differences in the molecular basis of multiple sclerosis: meta-analysis of transcriptomic dataJose Francisco Català-Senent, Zoraida Andreu, Marta R. Hidalgo, Roig Francisco José, Natalia Yanguas-Casás, Almudena Neva-Alejo, Adolfo López-Cerdán, Irene Soler-Sáez, María de la Iglesia-Vayá and Francisco García-García
6670P077-TShigella-type IpaH ubiquitin ligases in non-human-host enteroinvasive EscherichiaOlga Bochkareva, Natalia Dranenko and Maria Tutukina
3503P078-TSNEEP: SNP exploration and functional analysis using epigenomics dataNina Baumgarten, Chaonan Zhu, Ting Yuan, Meiqian Wu, Minh Duc Pham, Despina Stefanoska, Thorsten Kessler, Stefanie Dimmeler, Jaya Krishnan and Marcel H. Schulz
5307P079-TStatistical test to detect equivalence between feature lists based on the Sorensen-Dice index and GO term enrichmentPablo Flores, Jordi Ocaña Rebull, Miquel Salicrú Pages and Alex Sanchez
8741P080-TStudying the dynamics of relative RNA localization – From nucleus to the cytoplasmVasilis F. Ntasis and Roderic Guigó Serra
7485P081-TT-cell receptors as biomarkers for early diagnosis of colorectal cancer in Lynch SyndromeMaria S. Benitez-Cantos, Sonia Garcia-Rodriguez, Marta Cuadros, Carlos Cano, Antonio Poyatos-Andújar, Carmen Sánchez-Toro, Pilar Carrasco-Salas, Ana M. Serrano-Mira, Carmelo Diéguez-Castillo, Ana Delgado-Maroto and Paul Lizardi
5828P082-TThe adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell dataDennis Hecker, Fatemeh Behjati Ardakani and Marcel Schulz
2675P083-TThe Enrichment of Genes Associated with T-cell Proliferation and Memory Formation of B-cell Co-stimulatory Domain Potentiate CD19CAR-T cell FunctionsSocheatraksmey Ung, Jakrawadee Julamanee, Wannakorn Khopanlert, Kajornkiat Maneechai, Surasak Sangkhathat and Pongsakorn Choochuen
4499P084-TThe landscape of expression and alternative splicing variation across human traitsJosé Miguel Ramírez Cardeñosa, Raquel Garcia Perez and Marta Mele Messeguer
5863P085-TThe least diverged orthologue conjectureAlex Warwick Vesztrocy
2083P086-TThe Multilayer Community Structure of MedulloblastomaIker Núñez Carpintero, Marianyela Petrizzelli, Andrei Zinovyev, Davide Cirillo and Alfonso Valencia
1813P087-TtopRegNet: an analysis workflow for detecting enriched regulatory elements in RNA-seq datasetsAnshupa Sahu, Sugirthan Sivalingam, Farhad Shakeri, Svetozar Nesic and Andreas Buness
4341P088-TTowards sex-specific polygenic risk scoresMaría Morales Martínez, Hira Shahid, Kathleen Imbach and Eduard Porta Pardo
884P089-TTranscription start site signal profiling improves transposable element expression analysis at loci levelNatalia Savytska, Peter Heutink and Vikas Bansal
1608P090-TTranSNPs: A class of functional SNPs affecting mRNA translation potential revealed by fraction-based allelic imbalanceSamuel Valentini, Caterina Marchioretti, Alessandra Bisio, Annalisa Rossi, Sara Zaccara, Meriem Hadjer Hamadou, Elisa Pettinà, Giacomo Fantoni, Alberto Inga and Alessandro Romanel
6238P091-TUsing multi-omics to identify predictive markers of aggressive neuroendocrine cancerDimitria Brempou, Louise Izatt, Cynthia Andoniadou and Rebecca Oakey
9960P092-TVariability of nonsense-mediated mRNA decay (NMD) pathway efficiency in human cancersGuillermo Palou Márquez and Fran Supek
1583P093-TWASP – A versatile, web-accessible single cell RNA-seq processing platformAndreas Hoek, Katharina Maibach, Ebru Özmen, Torsten Hain, Susanne Herold and Alexander Goesmann
274P094-Tκ-velo improves single-cell RNA-velocity estimationValérie Marot-Lassauzaie, Brigitte Bouman, Fearghal Donaghy and Laleh Haghverdi
Climate Crisis and Health


Ref.Poster NºTitleAuthors
628P098-M3D modeling of genome reorganization upon senescenceVasiliki Varamogianni Mamatsi and Argyris Papantonis
6213P099-MA computational model of double strand breaks and repair explaining cut-and-paste structural variantsBingxin Lu and Chris Barnes
5333P100-MA database of copy number variant frequencies in the Spanish populationDaniel López-López, Gema Roldan, Jose Luis Fernandez-Rueda, Rosario Carmona, Virginia Aquino, Maria Peña-Chillet, Ruben Garcia, Rocio Nuñez, Anna Gonzalez, Guillermo Pita and Joaquin Dopazo
4794P101-MA phylum-wide genomic screen in cyanobacteria for RNA structure motifs adjacent to orthologues genes.Adrian Geissler, Elena Carrasquer-Álvarez, Niels-Ulrik Frigaard, Jan Gorodkin and Stefan E. Seemann
8215P102-MA universal protein-coding gene finderFerriol Calvet, Jaume Reig, Emilio Righi, Francisco Camara and Roderic Guigó
2625P103-MAccurate de novo identification of biosynthetic gene clustersLaura Carroll, Martin Larralde, Jonas Fleck, Ruby Ponnudurai, Alessio Milanese, Elisa Cappio and Georg Zeller
6008P104-MAggregated genomic data as cohort-specific allelic frequencies can boost variants and genes prioritization in non-solved cases of inherited retinal dystrophiesIonut Florin Iancu, Irene Perea-Romero, Gonzalo Nuñez-Moreno, Lorena de la Fuente, Raquel Romero, Almudena Ávila-Fernandez, Maria Jose Trujillo-Tiebas, Rosa Riveiro-Álvarez, Berta Almoguera, Inmaculada Martín-Mérida, Marta Del Pozo-Valero, Alejandra Damián-Verde, Marta Cortón, Carmen Ayuso and Pablo Minguez
3435P105-MAn evaluation of pipelines for DNA variant detection can guide a reanalysis protocol to increase the diagnostic ratio of genetic diseasesRaquel Romero, Lorena de la Fuente, Marta Del Pozo-Valero, Rosa Riveiro-Álvarez, María José Trujillo-Tiebas, Inmaculada Martín-Mérida, Almudena Ávila-Fernández, Ionut-Florin Iancu, Irene Perea-Romero, Gonzalo Núñez-Moreno, Alejandra Damián, Cristina Rodilla, Berta Almoguera, Marta Cortón, Carmen Ayuso and Pablo Mínguez
1333P106-MAn Interactive Workflow for Exploratory Detection of Genomic Insertions on a Population ScaleKedi Cao, Nourhan Elfaramawy, Matthias Weidlich and Birte Kehr
4581P107-MAn Orthogonal Approach for Genome Assembly Curation: Examples on Vertebrate Genome AssembliesFernando Cruz, Lucía Álvarez-González, Rut Lara-Hernández, Jèssica Gómez-Garrido, Margarida Barcelo-Serra, Laura Baldo, Aurora Ruiz-Herrera, José Antonio Godoy and Tyler Alioto
5908P108-MAnalysis of new immune systems using Deep LearningSven Hauns, Omer Alkhnbashi and Rolf Backofen
3856P109-MAnalysis of SNPs in E. Coli populations in murine gut metagenomesFrancisco Cerqueira, João Costa, Massimo Amicone and Isabel Gordo
8209P110-MAssessment of supervised methods for lncRNA function prediction from expression dataFatemeh Behjati, Hicham Saddiki, Matthias S. Leisegang, Theresa Gimbel, Frederike Boos, Stefanie Dimmeler, Ilka Wittig, Reinier Boon, Ralf P. Brandes and Marcel H. Schulz
2824P111-MAssessment of the structural differences of the JHEH from closely related insects as potential targets for safe pesticide designWeronika Bagrowska, Tomasz Skalski, Maria Bzówka and Artur Góra
8684P112-MAutomating the genome assembly process with SnakemakeJèssica Gómez-Garrido, Fernando Cruz, Marc Palmada-Flores, Laura Baldo and Tyler Alioto
5852P113-MBeacon Network goes v2Dmitry Repchevsky, Sergi Aguiló-Castillo, Dominik Bruchner, Teemu Kataja, Ville Muilu, Juha Törmroos, Babita Singh, Jordi Rambla, J. Dylan Spalding, Michael Baudis, Salvador Capella-Gutierrez and Josep Lluís Gelpí
5369P114-MBenchmarking and improving imputation approaches for recurrent inversions in the human genomeIllya Yakymenko, Jon Lerga-Jaso and Mario Cáceres
7102P115-MCell type specific drug response prediction from single cell dataNikoletta Katsaouni and Marcel Schulz
7904P116-MCESIM – A Simulator for Clonal EvolutionSarah Sandmann, Silja Richter, Xiaoyi Jiang and Julian Varghese
3302P117-MCharacterising human cell types using TF footprintingAybuge Altay, Yufei Zhang and Martin Vingron
3497P118-MCharacterization of the role of regulatory variants for trait pleiotropyAitor González
6347P119-MCimpleG: Simple CpG methylation signaturesTiago Maié, Marco Schmidt, Wolfgang Wagner and Ivan G. Costa
5031P120-MCloneTracer enables the identification of healthy and leukemic cells from single-cell transcriptomic dataSergi Beneyto-Calabuig, Anne Kathrin Merbach, Jonas Alexander Kniffka, Chelsea Szu-Tu, Magdalena Antes, Michael Scherer, Simon Raffel, Carsten Müller-Tidow and Lars Velten
2727P121-MCluster-based conserved non-coding element (CNE) characterizationSilvia Fibi-Smetana and Leila Taher
9164P122-MCoLoRd: Compressing long readsMarek Kokot, Adam Gudyś, Heng Li and Sebastian Deorowicz
1403P123-MCombining Epigenome and Genetic Mutation Data to Study Disease-Relevant Cell Types and Gene SetsAhlam Mallak, Dennis Hecker and Marcel Schulz
8467P124-MComparative Analysis of Long Versus Short-Read Sequencing Technologies in Terms of Structural Variants Inference for TriosSachin Gadakh, Mateusz Chiliński, Karolina Jodkowska, Jan Gawor and Dariusz Plewczynski
7503P125-MComparison of Chromatin Contacts Detectability in Human ESC-H1 Mapped Using GAM or Hi-CTeresa Szczepińska, Christoph Thieme, Sachin Gadakh, Alexander Kukalev, Warren Winick-Ng, Rieke Kempfer, Thomas Sparks, Miao Yu, Bing Ren, Dariusz Plewczynski and Ana Pombo
4588P126-MComprehensive analysis of genomic patterns in different types of dengue virusMyeongji Cho, Xianglan Min and Hyeon S. Son
7652P127-MContainerised Pipelines for Sensitive Sequencing DataTina Visnovska, Sadia Saeed, Lars la Cour Poulsen, Torunn Rønningen, Mai Britt Dahl, Junbai Wang, Tom Mala, Jon A. Kristinsson, Jens Kristoffer Hertel, Jøran Hjelmesæth, Matthias Blüher, Tone Gretland Valderhaug and Yvonne Böttcher
2826P128-MContaminant Detection using Differentiating k-mersAlessia Petescia, Martina Nebohacova, Jozef Nosek, Brona Brejova and Tomas Vinar
6548P129-MCopy number-aware methylation deconvolution analysis of cancers from whole genome bisulfite sequencing dataNana Mensah, Elizabeth Larose Cadieux, Tom Lesluyes, Jonas Demeulemeester and Peter Van Loo
2939P130-MDeciphering the etiology and role in oncogenic transformation of the CpG island methylator phenotype: a pan-cancer analysisJosephine Yates and Valentina Boeva
9088P131-MDetection and evaluation of variable number tandem repeatsMaryam Ghareghani, Hossein Moeinzadeh and Martin Vingron
6110P132-MDevelopment of a new structural variant detection software based on graph clustering algorithms from long readsNicolas Gustavo Gaitan Gomez and Jorge Duitama
9259P133-MDifferential methylation analysis signature evaluation using Hobotnica metricAnna Budkina, Alexey Stupnikov and Yulia Medvedeva
997P134-MDiscovering Significant Evolutionary Trajectories in Cancer PhylogeniesLeonardo Pellegrina and Fabio Vandin
4206P135-MDNA-DDA predicts genome wide 3D chromatin structure directly from the reference sequenceXenia Lainscsek and Leila Taher
2804P136-MEvidence-driven annotation of the Trichechus manatus latirostris genome using long-readsAlejandro Paniagua, Francisco J. Pardo-Palacios and Ana Conesa
1106P137-MFrameRate: predicting coding frames direct from unassembled DNA readsWang Liu-Wei, Robert Hoehndorf, Wayne Aubrey, Christopher Creevey, Amanda Clare and Nicholas Dimonaco
2935P138-MGenetic diversity in Amaranthaceae cropsFelix Leopold Wascher, Nancy Stralis-Pavese, Heinz Himmelbauer and Juliane C. Dohm
5847P139-MGenome sequencing and comparative genomic analysis of turmeric plant provide insights into adaptive evolution of its medicinal propertiesAbhisek Chakraborty, Shruti Mahajan, Shubham K. Jaiswal and Vineet K. Sharma
9607P140-MGermline genetics correlates with aberrant signaling pathways in cancerDavide Dalfovo, Riccardo Scandino, Marta Paoli, Samuel Valentini and Alessandro Romanel
4322P141-MGPU-Accelerated Pairwise Sequence Alignment using the Wavefront AlgorithmQuim Aguado-Puig, Santiago Marco-Sola, Juan Carlos Moure, Christos Matzoros, David Castells-Rufas, Antonio Espinosa and Miquel Moreto
6579P142-MGWAS of vessel diameter, number of bifurcations, and main temporal angles identifies genetic variants in OCA2, HERC2 and other genes to modulate these traitsSofia Ortin Vela, Michael Johannes Beyeler, Mattia Tomasoni, Olga Trofimova, Florence Hoogewoud and Sven Bergmann
3623P143-MHaplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring dataRebecca Serra Mari, Sven Schrinner, Richard Finkers, Paul Arens, Maximilian H.-W. Schmidt, Björn Usadel, Gunnar W. Klau and Tobias Marschall
8830P144-MHuman glycosylation gene variants as possible contenders to explain differences in SARS-CoV-2 disease severity in Indian sub populations.Bithika Chatterjee and Shekhar Mande
327P145-MIdentification and characterization of the microbiome, resistome, and mobilome in the wastewater treatment plantStephanie Pillay, Ramin Shirali Hossein Zade and Thomas Abeel
2754P146-MIdentification of epivariations in rare diseases from a single patient perspective.Robin Grolaux, Alexis Hardy and Matthieu Defrance
9612P147-MIdentification of genes under positive selection in E. coli: Focusing on antibiotic resistanceNegin Malekian Boroujeni
6453P148-MIdentification of genome edited cells using CRISPRnanoThach Nguyen, Haribaskar Ramachandran, Soraia Martins, Jean Krutmann and Andrea Rossi
7863P149-MIdentification of regions with high evolutionary variability on the SARS-CoV-2 S1 and S2 surface glycoprotein.Katrina Norwood, Alice McHardy, Susanne Reimering and Thorsten Klingen
1927P150-MIdentification of viral miRNAsAlexandra Schubö, Armin Hadziahmetovic, Leonie Pohl, Markus Joppich and Ralf Zimmer
2188P151-MImpacts of COVID-19 on the Microbiome: A Bioinformatics and Machine Learning StudyBertalan Takács, Zoltán Gyuris, Lajos Pintér, Ádám Visnyovszki, Nóra Éva Nagy, Márton Zsolt Enyedi, Edit Hajdú and Lajos Haracska
758P152-MImproving multiplicity assignments in de Bruijn graphs using Loopy Belief Propagation inference on Conditional Random Fields.Aranka Steyaert, Pieter Audenaert and Jan Fostier
2284P153-MInferring mutational signatures from distinct copy-number eventsTom L Kaufmann and Roland F Schwarz
4377P154-MInfluence of motif interactions on post-hoc attribution methods in genomic CNNsMarta S. Lemanczyk, Jakub M. Bartoszewicz and Bernhard Y. Renard
1536P155-MInterpretable deep learning for phage life cycle predictionMelania Nowicka, Jakub M Bartoszewicz and Bernhard Y Renard
8586P156-MIntrinsic linking of chromatin in human cellsMaciej Borodzik, Michał Denkiewicz, Krzysztof Spaliński, Kamila Winnicka, Sevastianos Korsak, Kaustav Sengupta, Marcin Pilipczuk, Michał Pilipczuk, Yijun Ruan and Dariusz Plewczynski
3015P157-MJLOH: Extracting Loss of Heterozygosity Blocks from Short-Read Sequencing DataMatteo Schiavinato
9113P095-Tk-mer and GWAS approaches to identify host-specific genomic determinants in Klebsiella pneumoniaeKonstantinos A. Kyritsis, Georgios-Nikolaos Kartanos, Victoria Siarkou and Fotis Psomopoulos
6078P096-TLeveraging patient-level metatranscriptomics data and phase variation predictions to prioritize bacterial antigensBart Cuypers, Pieter Meysman, Alessandro Brozzi, Normand Blais, Christophe Lambert and Kris Laukens
1150P097-TLIVE-DREAM: Live analysis of NGS data using an optimized hierarchical inter-leaved Bloom Filter indexFerdous Nasri, Tobias Loka and Bernhard Y Renard
9739P098-TLong non-coding RNAs and novel transcripts as the principal source of potential novel neoantigens in hepatocellular carcinomaMarta E. Camarena, Júlia Perera-Bel and M. Mar Albà
8956P099-TLooking at the overall picture: development of a metagenomic analyses pipeline for highly diverse microbial communities in heritage scienceMonika Waldherr, Laura Rabbachin, Johannes Tichy, Guadalupe Piñar, Martin Ortbauer, Beate Sipek and Alexandra Graf
5102P100-TLossless Approximate Pattern Matching on Pan-genome de Bruijn GraphsLore Depuydt, Luca Renders, Thomas Abeel and Jan Fostier
8600P101-TMetagenetics versus metagenomics, a dual approach to reach strain-level resolution for starter culture monitoringCristian Díaz-Muñoz, Hannes Decadt, Luc De Vuyst and Stefan Weckx
1314P102-TmetagWGS: a workflow to analyse short and long HiFi metagenomic readsJoanna Fourquet, Jean Mainguy, Maïna Vienne, Céline Noirot, Vincent Darbot, Pierre Martin, Olivier Bouchez, Adrien Castinel, Sylvie Combes, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Geraldine Pascal and Claire Hoede
1769P103-TMetaProFi: An ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variantsSanjay Kumar Srikakulam, Sebastian Keller, Fawaz Dabbaghie, Robert Bals and Olga Kalinina
5368P104-TModeling dynamic interactions within human gut microbiome using statistical approachZuzanna Karwowska, Marcin Możejko, Paweł Szczerbiak, Ewa Szczurek and Tomasz Kościółek
4426P105-TMulti-scale phase separation by explosive percolation with single chromatin loop resolutionKaustav Sengupta, Michał Denkiewicz, Mateusz Chiliński, Sevastianos Korsak, Teresa Szczepinska, Ayatullah Faruk Mollah, Raissa D’Souza, Yijun Ruan and Dariusz Plewczynski
8524P106-TMutation Clonality, Neoantigens, and Immune Biomarkers relate to Immunotherapy Response in Bladder Cancer patientsLilian Marie Boll, Júlia Perera-Bel, Oriol Arpí, Ana Rovira, Núria Juanpere Rodero, Silvia Hernández-Llodrà, Josep Lloreta, Alejo Rodriguez-Vida, M. Mar Albà and Joaquim Bellmunt
7537P107-TMutational signatures are markers of drug sensitivity of cancer cellsFran Supek, Jurica Levatić, Marina Salvadores and Francisco Fuster-Tormo
1715P109-TNGSEP 4: EFFICIENT AND ACCURATE IDENTIFICATION OF ORTHOGROUPS AND WHOLE-GENOME ALIGNMENTLaura Natalia González García, Daniel Tello, Juan Camilo Zuluaga-Monares, Ricardo Angel, Daniel Mahecha, Nicolas Cardozo, Camilo Escobar, Jorge Gomez, Mario Linares-Vasquez and Jorge Duitama
6198P110-TOMArk: Quality assessment of protein-coding gene repertoiresYannis Nevers, Victor Rossier and Christophe Dessimoz
9432P111-TOmics approaches and artificial intelligence strategies applied to industrial Saccharomyces cerevisiae yeasts for corn and second-generation ethanol production processesMarcelo Falsarella Carazzolle, Beatriz Vargas, Larissa Escalfi Tristao, Thais Oliveira Secches, Jade Ribeiro dos Santos, Juliana Jose, Fellipe da Silveira Bezerra Mello and Gonçalo Amarante Guimarães Pereira
3332P112-TPerSVade: Personalized Structural Variation detection in your species of interestMiquel Àngel Schikora Tamarit and Toni Gabaldón
6507P113-TPhyloCloud: an online platform for making sense of phylogenomic dataZiqi Deng, Jorge Botas, Carlos P Cantalapiedra, Ana Hernández-Plaza, Jordi Burguet-Castell and Jaime Huerta-Cepas
8677P114-TPhylomeDB v5: An updated site to browse and mine genome-wide catalogs of gene phylogeniesDiego Fuentes Palacios, Manu Molina, Uciel Chorostecki, Salvador Capella-Gutiérrez, Marina Marcet-Houben and Toni Gabaldón
5259P115-TPredicting Virulence of Listeria Monocytogenes using Whole Genome Sequencing and Machine LearningAlexander Gmeiner, Patrick Murigu Kamau Njage, Lisbeth Truelstrup Hansen and Pimlapas Leekitcharoenphon
9313P116-TPrevalence and Specificity of Chemoreceptor Profiles in Plant-Associated BacteriaClaudia Sanchis-López, Jean Paul Cerna-Vargas, Saray Santamaría-Hernando, Cayo Ramos, Tino Krell, Pablo Rodríguez-Palenzuela, Emilia López-Solanilla, Jaime Huerta and José J. Rodríguez-Herva
8005P117-TProton and alpha radiation-induced mutational profiles in human cells.Tiffany Delhomme, Manuela Buonanno, Grilj Veljko, Josep Biayna and Fran Supek
5346P118-TQuantifying microbial dark matter and its impact on metagenomic analysesElizabeth Yuu, Vitor Piro and Bernhard Renard
7040P119-TRead-level GC bias correction for improved cell-free DNA signal processingSebastian Röner, Benjamin Spiegl, Michael R. Speicher and Martin Kircher
1619P120-TRecurrent positive selection of lipid trafficking genes in ClupeiformesJorge Langa, Yuri Rueda, Aitor Albaina, Martin Huret, Darrell Conklin and Andone Estonba
3783P121-TRedefining Promoter DNA Methylation Change in CancerRichard Heery and Martin Schaefer
5450P122-TRelation between genome mutability, variant pathogenicity and vertical ionization potential of nucleobase motifsCyril Karamaoun, Pauline Hermans, Fabrizio Pucci and Marianne Rooman
5615P123-TResolution of deep nodes and new solid backbone phylogeny in Ophioglossaceae fernsDarina Koubínová, Li-Yaung Kuo and Jason Grant
6082P124-TSample demultiplexing and doublets removal from single-nuclei RNA sequencing dataKwong Leong Wong, Lena Jassowicz, Peter Lichter, Christel Herold-Mende, Martina Seiffert and Marc Zapatka
1667P125-TscTAM-seq enables targeted high-confidence analysis of DNA methylation in single cellsAgostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten and Renee Beekman
8914P126-TShared genetic architecture between tobacco smoking and iron concentration in the brain’s dorsal striatumOlga Trofimova and Sven Bergmann
2410P127-TSingle-cell guided deconvolution of bulk AML transcriptomics recapitulates FAB landscape and CD14+ Monocyte percentage predicts Venetoclax resistanceEmin Onur Karakaslar, Jeppe Severens, Elena Sanchez Lopez, Peter van Balen, Heendrik Veelken, Marcel Jt Reinders, Marieke Griffioen and Erik van den Akker
6762P128-TSingle-cell resolution unravels spatial alterations in metabolism, transcriptome and epigenome of ageing liverChrysa Nikopoulou, Niklas Kleinenkuhnen, Swati Parekh, Tonantzi Sandoval, Farina Schneider, Patrick Giavalisco, Mihaela Bozukova, Anna Juliane Vesting, Janine Altmüller, Thomas Wunderlich, Vangelis Kondylis, Achim Tresch and Peter Tessarz
638P129-TSonicParanoid enhanced by machine learning allows fast de novo orthology inference of huge MAG datasetsSalvatore Cosentino and Wataru Iwasaki
7525P130-TSounds trivial – but it’s not! Automatic reference detection and web service independent reconstruction of influenza A and B genomesKatja Winter, Oliver Drechsel, Marianne Wedde, Ralf Dürrwald, Thorsten Wolff and Stephan Fuchs
902P131-TStatistical and data mining analysis of stop codon triplets in introns in view of the stop-to-stop ORF definitionValentin Wesp and Stefan Schuster
6709P132-TStrengths and weaknesses of metabarcoding long read.Jean Mainguy, Adrien Castinel, Olivier Bouchez, Sylvie Combes, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Claire Hoede and Geraldine Pascal
7488P133-TStructural comparison of chromatin interaction networks generated from Hi-C dataGatis Melkus, Lelde Lace, Peteris Rucevskis, Sandra Silina, Andrejs Sizovs, Edgars Celms and Juris Viksna
4984P134-TSynggen: fast and data-driven generation of synthetic heterogeneous NGS cancer dataRiccardo Scandino, Federico Calabrese and Alessandro Romanel
5987P135-TTaking the prediction of pathogenic variant-combinations to the next level with VarCoPP2.0Nassim Versbraegen, Barbara Gravel, Charlotte Nachtegael, Alexandre Renaux, Emma Verkinderen, Ann Nowé, Tom Lenaerts and Sofia Papadimitriou
3491P136-TTarget-Oriented miRNA Discovery (TOMiD) Analysis of qCLASH Ribonomics ExperimentsDaniel Stribling, Nicholas Hiers, Mingyi Xie and Rolf Renne
6989P137-TThe additive effects of Next Generation Sequencing error sources on the quality of de novo genome assemblyAlex Váradi, Zoltán Rádai, Nikoletta A Nagy, Péter Takács, Gábor Kardos and Levente Laczkó
4924P138-TThe genome of Belgium: whole genome sequencing of the Belgian population to enable public health genomicsThomas Delcourt, Charlotte De Vogelaere, Emilie Cauët, Nina Van Goethem, Johan Van der Heyden, Stefaan Demarest, Karin De Ridder, Nancy Roosens, Marc Van Den Bulcke and Kevin Vanneste
7141P139-TThe Spatial Organization Of Enhancers Around Promoter Regions Within Chromatin Contact Domains For Selected Human Cell Lines: Structural Regulatory LandscapeAbhishek Agarwal and Dariusz Plewczyński
9193P140-TTowards an atlas of copy-number conditional selection on somatic mutations in cancer driver genesElizaveta Besedina and Fran Supek
7646P141-TTP53-dependent toxicity of CRISPR/Cas9 cuts is differential across genomic loci and can confound genetic screeningMiguel M Álvarez, Josep Biayna and Fran Supek
7435P142-TTraining DeepSignal models to call CpG methylation in pig and quail ONT readsPaul Terzian, Céline Vandecasteele, Christine Gaspin, Cécile Donnadieu, Denis Milan, Rémi-Félix Serre and Christophe Klopp
707P143-TTransformer Language Models for Genomic SequencesVlastimil Martinek, David Cechak, Petr Simecek and Panagiotis Alexiou
5181P144-TTransgenerational epigenetics in quail: whole genome DNA methylation analysisChloé Cerutti, Sophie Leroux, Paul Terzian, David Gourichon, Frederique Pitel and Guillaume Devailly
3093P145-TUnbiased discovery of diversity-generating mechanisms and mobile genetic elementsJordi Abante and Julia Salzman
4973P146-TUncovering signatures of mutational processes in SARS-CoV-2Kieran Lamb
795P147-TUntangling Costa Rican cocoa bean fermentation processes using a combined shotgun metagenomics, metatranscriptomics, and meta-metabolomics approachStefan Weckx, Marko Verce and Luc De Vuyst
3384P148-TUnveiling epigenetic profiles of transposable elements in ChIP-seq data using T3EMichelle Almeida da Paz and Leila Taher
4624P149-TUplifting trimAl for handling thousands of sequencesNicolás Díaz Roussel and Salvador Capella Gutiérrez
5775P150-TUsing AlphaFold2-generated structural information to improve detection of evolutionary adaptations in proteinsSophie-Luise Heidig, Ravy Leon Foun Lin, Danny Ionescu, Jean-François Flot and Wim Vranken
7600P151-TVariable DNA methylation underlies mutation rate variability at the mesoscale in human somatic cellsDavid Mas-Ponte and Fran Supek
3965P152-TVARIANT PRIORITIZATION IN PLASMA WHOLE-EXOME SEQUENCING FOR THE IDENTIFICATION OF POTENTIAL THERAPEUTIC TARGETS IN RELAPSING COLON CANCER PATIENTSJorge Martín-Arana, Francisco Gimeno-Valiente, Roberto Tébar-Martínez, Blanca García-Micó, Valentina Gambardella, Marisol Huerta, Carolina Martínez-Ciarpaglini, Juan Antonio Carbonell-Asins, Manuel Cabeza-Segura, José Martín-Arévalo, David Casado, Vicente Pla, Leticia Pérez, Pilar Rentero-Garrido, Sheila Zúñiga-Trejos, Susana Roselló, Tania Fleitas, Josefa Castillo, Desamparados Roda, Andrés Cervantes and Noelia Tarazona
9752P153-TVessel type-specific GWAS of Retinal Vessel Tortuosity Identifies 173 Novel Loci Revealing Genes and Pathways Associated with Vascular Pathomechanisms and DiseasesMichael Beyeler, Sofia Ortin Vela, Mattia Tomasoni and Sven Bergmann
2212P154-TWhat is the reality? – Influence of the sequencing technology and the approach on microbial community composition estimationDedan Githae, Agata Jarosz, Kinga Herda, Kamila Marszałek, Wojciech Branicki and Paweł Łabaj
1671P155-TWhole genome of a biparental beetle species, Anoplotrupes stercorosusNikoletta A Nagy, Levente Laczkó and Zoltán Barta
Climate Crisis and Health


Ref.Poster NºTitleAuthors
6465P158-M3DBionotes COVID-19 Structural Hub: a central resource for validation information and refined modelsJose Ramon Macias Gonzalez, Carolina Simon Guerrero, Erney Ramírez Aportela, Jose Luis Vilas Prieto, Marta Martinez Gonzalez, Carlos Oscar Sanchez Sorzano and Jose Maria Carazo
5334P159-MA graph based method for identifying and clustering short tandem repeatsPatryk Jarnot, Joanna Ziemska-Legięcka, Marcin Grynberg, Aleksandra Gruca and Vasilis Promponas
8454P160-MA graph-based algorithm for detecting rigid domains in protein structuresLinh Dang, Thach Nguyen and Michael Habeck
3233P161-MAlternative to combat superbugs – dynamic determinants of quorum quenching enzymes and their engineering towards efficient antibacterial potencyBartlomiej Surpeta, Michal Grulich, Andrea Palyzová, Helena Marešová and Jan Brezovsky
6439P162-MAmyloGraph: A comprehensive database of amyloid-amyloid interactionsMichal Burdukiewicz, Dominik Rafacz, Agnieszka Barbach, Katarzyna Hubicka, Laura Bąkała, Anna Lassota, Jakub Stecko, Natalia Szymańska, Jakub Wojciechowski, Dominika Kozakiewicz, Natalia Szulc, Jarosław Chilimoniuk, Izabela Jęśkowiak, Marlena Gąsior-Głogowska and Malgorzata Kotulska
7693P163-MAnalysis of fragment screening datasets in context with Human genetic variationJavier Sánchez Utgés, Callum Ives, Stuart MacGowan and Geoff Barton
8789P164-MAnnotating the regeneration transcriptome of Cloeon dipterum.Patricia Medina-Burgos, Israel Barrios-Núñez, Fernando Casares and Ana Rojas
8539P165-MAnnotation of biologically relevant ligands in UniProtKB using ChEBIElisabeth Coudert, Sebastien Gehant, Edouard de Castro, Monica Pozzato, Christian Sigrist, Delphine Baratin, Teresa Neto, Nicole Redaschi and Alan Bridge
9620P166-MAPPRIS Principal Isoforms and MANE Select Transcripts Define Reference Splice VariantsFernando Pozo, Laura Martinez Gomez, Jose Manuel Rodriguez, Jesús Vázquez and Michael Tress
7552P167-MATHENA: Analysis of Tumor Heterogeneity from Spatial Omics MeasurementsAdriano Martinelli, Pushpak Pati and Maria Anna Rapsomaniki
5457P168-MATMision: a web portal for the in silico annotation of ATM missense variants beyond pathogenicity predictionsNatàlia Padilla Sirera, Luz Marina Porras, Alejandro Moles-Fernandez, Lidia Feliubadaló, Marta Santamariña-Pena, Alysson T. Sánchez, Anael López-Novo, Ana Blanco, Miguel de la Hoya, Ignacio J. Molina, Ana Osorio, Marta Pineda, Daniel Rueda, Clara Ruiz-Ponte, Ana Vega, Conxi Lázaro, Orland Díez, Sara Gutiérrez-Enríquez and Xavier de la Cruz
3336P169-MAutomated System for Mechanistic Analysis and Interpretation of Genetic VariantsAna C. González-Álvarez, Francisco J. Guzmán-Vega, Kelly J. Cardona-Londoño, Karla A. Peña-Guerra and Stefan T. Arold
1421P170-MBenchmarking of current conformational B-cell epitope prediction methodsGabriel Cia, Fabrizio Pucci and Marianne Rooman
4693P171-MBiases and generalizability in predictions of protein-protein binding affinity changes upon mutationsMatsvei Tsishyn, Marianne Rooman and Fabrizio Pucci
7589P172-MCanProSite: Predicting potential residues associated with lung cancer using deep neural networkMedha Pandey and M. Michael Gromiha
3366P173-MCharacterization of rare and novel AlphaFold structural spaceJanani Durairaj, Mehmet Akdel, Pedro Beltrão and Torsten Schwede
1310P174-MCharacterizing and explaining impact of disease-associated mutations in proteins without known structures or structural homologuesNeeladri Sen, Ivan Anishchanka, Nicola Bordin, Ian Sillitoe, Sameer Velankar, David Baker and Christine Orengo
6984P175-MCOCOMAPS-2: an improved web tool for characterizing the interface of protein-protein and protein-nucleic acids complexesTiziana Ricciardelli, Mohit Chawla, Luigi Cavallo and Romina Oliva
2713P176-MComparative clustering of eukaryote complexomes identifies novel taxon-specific protein complexes and interactorsJoeri van Strien, Felix Evers, Madhurya Lutikurti, Alfredo Cabrera Orefice, Ulrich Brandt, Taco W.A. Kooij and Martijn Huynen
7873P177-MComputational approach for the recognition of small molecule inhibitors for Toll-like receptorShailya Verma and Ramanathan Sowdhamini
2217P178-MComputational approach to identify multifunction by metamorphism in proteinsIsrael Barrios Núñez and Ana Rojas M.
5151P179-MComputational function prediction in UniProt & AI/ML community engagementVishal Joshi, Hermann Zellner and Maria Martin
2095P180-MComputational prediction of epitope-specific paratopes using convolutional neural networksDong Li, Marianne Rooman and Fabrizio Pucci
8237P181-MConformine, a predictor of protein Conformational Variability from amino acid sequenceJose Gavalda-Garcia and Wim Vranken
8964P182-MConservation and evolution of Roquin-1 binding sites of known and novel targets in the T cell transcriptomeGiulia Cantini, Taku Ito-Kureha, Elaine H. Wong, Gesine Behrens, Lambert Moyon, Annalisa Marsico and Vigo Heissmeyer
3698P183-MDarwin: a side-chain positioning program with electron density map constraints based on an exact optimization frameworkNadege Polette, Mikael Grialou and David Allouche
8977P184-MDDGun: an untrained predictor of protein stability changes upon amino acid variantsLudovica Montanucci, Emidio Capriotti, Giovanni Birolo, Silvia Benevenuta, Corrado Pnacotti, Dennis Lal and Piero Fariselli
3634P185-MDe novo proteins from rice have a potential for forming structured entitiesFrancisco J. Guzmán-Vega, Yuanmin Zheng, Afaque A. Momin and Stefan T. Arold
7709P186-MDeciphering protein secretion from brain to CSF for biomarker discoveryKatharina Waury, Renske De Wit and Sanne Abeln
6002P187-MDeciphering the RRM-RNA recognition code: A computational analysisJoel Roca-Martinez, Hrishikesh Dhondge and Wim Vranken
2400P188-MDeep-learning protein structure predictions suggest likely molecular functions for two uncharacterised polytopic membrane proteins from the P. falciparum apicoplastDavid Murphy, Daniel Rigden, Shahram Mesdaghi, Filomeno Sanchez Rodriguez, Adam Simpkin and J Javier Burgos-Mármol
4524P189-MDesigning next-generation kinase inhibitors using machine learning of structural and chemical featuresNicholas Clark, Ratul Chowdhury, Clemens Hug, Caitlin Mills, Peter Sorger and Mohammed Alquraishi
9196P190-MDevelopment of a free interactive web portal for cytometry data gatingRobin Cohen, Gabor Beke, Lubos Klucar, Dana Cholujova and Jana Jakubikova
4249P192-MDiscovering novel genes in bacteria: gene function prediction using protein embeddings and syntenyAysun Urhan, Bianca-Maria Cosma and Thomas Abeel
3271P193-MDistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterpartsYaron Geffen, Yanay Ofran and Ron Unger
6785P194-MDrug repurposing for identification of potential spike inhibitors for SARS-CoV-2 using molecular docking and molecular dynamics simulationsMichal Lazniewski, Doni Dermawan and Dariusz Plewczynski
1377P195-MElucidating important structural features for the binding affinity of spike – SARS-CoV-2 neutralizing antibody complexesDivya Sharma and M. Michael Gromiha
8123P196-MEnzyme and transporter annotation in UniProtKB using Rhea and ChEBILionel Breuza, Lucila Aimo, Ghislaine Argoud-Puy, Kristian Axelsen, Emmanuel Boutet, Cristina Casals-Casas, Elisabeth Coudert, Marc Feuermann, Nadine Gruaz-Gumowski, Damien Lieberherr, Michele Magrane, Anne Morgat, Nevila Hyka-Nouspikel, Lucille Pourcel, Sylvain Poux, Catherine Rivoire, Shyamala Sundaram, Rossana Zaru and Alan Bridge
9416P197-ME-SNPs&GO: Embedding of protein sequence and function improves the prediction of human pathogenic variantsMatteo Manfredi, Castrense Savojardo, Pier Luigi Martelli and Rita Casadio
7308P198-MExpression regulation of protein complex partners as a compensatory mechanism in aneuploid tumorsGokce Senger, Stefano Santaguida and Martin Schaefer
3691P199-MFeatures derived from protein 3D structure improve prediction of variant effects in novel proteinsAlexander Gress and Olga V. Kalinina
9407P156-TFoldseek: fast and accurate protein structure searchMichel van Kempen, Stephanie Kim, Charlotte Tumescheit, Milot Mirdita, Cameron Gilchrist, Johannes Soding and Martin Steinegger
7943P157-TFrustraEvo: Assessing Protein Families Divergence In The Light Of Sequence and Energetic ConstraintsVictoria Ruiz-Serra, Maria Freiberger, Camila Pontes, Miguel Romero, Pablo Galaz-Davison, Cesar Ramirez-Sarmiento, Rodrigo Gonzalo Parra and Alfonso Valencia
4867P158-TFunctional Impacts of Copy Number Imbalance in Aneuploid CancerElle Loughran, Emmanuel Barillot, Andrei Zinovyev, Nicolas Servant and Aoife McLysaght
5684P159-TGaussian accelerated molecular dynamics for the convergence of allosterismOriol Gracia i Carmona, Franca Fraternalli and Chris Oostenbrink
7011P160-THighly significant improvement of protein sequence alignments with AlphaFold2Leila Mansouri, Athanasios Baltzis, Suzanne Jin, Björn E. Langer, Ionas Erb and Cedric Notredame
2580P161-THigh-throughput analyses of internal voids in biomolecules and ligand transport through them with TransportTools libraryJan Brezovsky, Carlos Eduardo Sequeiros-Borja, Aravind Selvaram Thirunavukarasu, Bartlomiej Surpeta, Nishita Mandal and Dheeraj Kumar Sarkar
7986P162-TIdentification of protein-protein interaction hubs in multiple sclerosisGözde Yazıcı, Burcu Kurt Vatandaşlar, Bilal Kerman, Emre Karakoç and Can Alkan
2821P164-TImproving Tandem Repeats Proteins annotation and classification in RepeatsDBMartina Bevilacqua, Damiano Clementel, Alexander Monzon, Jiachen Lu, Paula Arrias and Silvio Tosatto
8661P165-TInvestigation of Bacterial Fibrillar Adhesins and their Binding CharacteristicsVivian Monzon and Alex Bateman
1940P166-TLower-order Statistics Facilitate Decoy-free FDR Control in Shotgun ProteomicsDominik Madej and Henry Lam
1976P167-TMachine learning applications for the classification of serial ED dataSenik Matinyan, Burak Demir and Jan Pieter Abrahams
6279P168-TMobiDB: intrinsically disordered proteins in 2022Alexander Monzon, Damiano Piovesan and Silvio Tosatto
526P169-TModCRE: a structure homology-modeling approach to predict TF binding in cis-regulatory elementsBaldo Oliva, Oriol Fornes, Alberto Meseguer, Joaquim Aguirre-Plans, Patrick Gohl, Patricia-Mirela Bota, Ruben Molina-Fernandez, Altair Chinchilla, Ferran Pegenaute, Oriol Gallego, Narcis Fernandez-Fuentes and Jaume Bonet
6055P170-Tnf-core/proteinfold: a bioinformatics best-practice pipeline for protein 3D structure predictionAthanasios Baltzis, Jose Espinosa-Carrasco, Luisa Santus, Martin Steinegger, Harshil Patel and Cedric Notredame
9899P171-TNovel ADP-ribosyltransferase families in the Legionella genusMarianna Krysińska, Krzysztof Pawłowski and Marcin Gradowski
3776P172-TNovel binding site descriptors built upon inverse virtual screeningArnau Comajuncosa-Creus, Miquel Duran-Frigola, Xavier Barril and Patrick Aloy
9776P173-TOrigin and evolution of Cas9 and Cas12 proteinsDarius Kazlauskas, Lukas Valančauskas and Česlovas Venclovas
8378P174-TPACT – Prediction of Amyloid Cross-interactions by ThreadingJakub Wojciechowski and Małgorzta Kotulska
8921P175-TPanPA: Construction and Alignments of Panproteome GraphsFawaz Dabbaghie, Sanjay Srikakulam, Olga Kalinina and Tobias Marschall
5271P176-TPrankWeb3 – ligand binding site prediction for PDB and AlphaFold structuresDavid Jakubec, Petr Škoda, Radoslav Krivak, Marian Novotny and David Hoksza
5389P177-TPredicting the binding affinity of antibodies with antigensNahin Khan, Hossam Almeer, Joao Palotti, Sanjay Chawla and Ehsan Ullah
213P178-TPredictive and comparative analysis of interaction hotspots of ACE2 orthologs in potential intermediate hosts for SARS-CoV-2Myeongji Cho, Nara Been and Hyeon S. Son
1706P179-TProtVar: Protein coding variant annotationRizwan Ishtiaq, James Stephenson, Alok Mishra and Maria Jesus Martin
6740P180-TReduced structural flexibility of eplet amino acids in HLA proteinsDiego Amaya, Romain Lhotte, Magali Devriese, Constantin Hays, Jean-Luc Taupin and Marie-Dominique Devignes
1079P181-TSchistosoma mansoni MEG family proteins in the environment of host-parasite interactionsStepanka Nedvedova, Kristyna Peterkova, Vojtech Vacek, Petr Mateju, Lukas Konecny, Jan Dvorak, Adriana Erica Miele, Francesca Fiorini Tregouët and Maggy Hologne
4751P182-TSingle-cell map of Acute Myeloid LeukaemiaAlice Driessen, Susanne Unger, An-Phi Nguyen, Burkhard Becher and Maria Rodriguez Martinez
4296P183-TSparseChem: Fast and accurate machine learning model for small moleculesAdam Arany, Jaak Simm, Martijn Oldenhof and Yves Moreau
7467P184-TSpatial relationships in the urothelial cancer microenvironment, the potential for immune-based subtyping and immunotherapy response predictionAlberto Gil-Jimenez, Nick van Dijk, Yoni Lubeck, Maurits L. van Montfoort, Erik Hooijberg, Annegien Broeks, Bas van Rhijn, Daniel J. Vis, Michiel S. van der Heijden and Lodewyk F. A. Wessels
1636P185-TStructural and functional insights into P proteinShahram Mesdaghi
5173P186-TStructural modeling and computational analysis of uncharacterized anti-CRISPR Cas proteinsLukas Valančauskas, Darius Kazlauskas and Česlovas Venclovas
431P187-TStructural modelling of odorant receptors from Aedes aegypti and search for natural repellentsVikas Tiwari and Ramanathan Sowdhamini
2500P188-TStructure-activity relationships generated for peptaibols produced by Trichoderma: via accelerated MD simulationsDóra Balázs, Chetna Tyagi, Tamás Marik, András Szekeres, Csaba Vágvölgyi and László Kredics
4272P189-TStudying the effect of phosphorylations on protein backbone dynamicsDavid Bickel and Wim Vranken
2408P190-TSuperfamily analysis of rice protein structures reveals a variety of stress tolerance mechanismsFatima Shahid, Nicola Bordin, Christine Anne Orengo and Su Datt Lam
1322P191-TTargeting SARS-CoV-2 Endoribonuclease: A structure-based virtual screening supported by in vitro analysisIbrahim Mohamed, Abdo Elfiky, Mohamed Fathy, Sara Mahmoud and Mahmoud Elhefnawi
6099P192-TThe alteration of structural network by transient association between proteinsVasam Manjveekar Prabantu, Himani Tandon, Sankaran Sandhya and Narayanaswamy Srinivasan
1675P193-TThe clinical importance of tandem exon duplication-derived substitutionsLaura Martinez-Gomez, Fernando Pozo Ocampo, Thomas A. Walsh, Federico Abascal and Michael Tress
9209P194-TThe importance of protein-protein interactions in Toll-like receptor 8 functioningMaria Bzówka, Weronika Bagrowska and Artur Góra
4827P195-TDevelopment of continuous, protein-specific predictors of the impact of protein sequence variantsSelen Ozkan, Natàlia Padilla Sirera and Xavier de la Cruz
1026P196-TWhat is hidden in the darkness? A large-scale approach to make sense of all natural unknown proteinsJoana Pereira and Torsten Schwede
1937P197-TWhere do they come from, where do they go? Prediction of protein subplastid localization and origin with PlastoGram.Katarzyna Sidorczuk, Przemyslaw Gagat, Jakub Kała, Henrik Nielsen, Filip Pietluch, Paweł Mackiewicz and Michal Burdukiewicz
Climate Crisis and Health


Ref.Poster NºTitleAuthors
8972P201-MA functional analysis of omic network embedding spaces reveals key altered functions in cancer.Sergio Doria-Belenguer, Alexandros Xenos, Gaia Ceddia, Noel Malod and Natasa Przulj
1656P202-MA mathematical model for strigolactone biosynthesis in plantsAbel Lucido, Ester Vilaprinyo and Rui Alves
5069P203-MA Mechanistic Cellular Atlas of the Rheumatic JointNaouel Zerrouk, Sahar Aghakhani, Vidisha Singh, Franck Augé and Anna Niarakis
8238P204-MA user-friendly strain design pipeline enabling the reproducible identification of Knock-Out strategies for overproducing metabolites of interest.Álvaro Gargantilla Becerra, David San León Granado and Juan Nogales Enrique
2450P205-MAn agent-based model of tumor-associated macrophage differentiation in chronic lymphocytic leukemiaNina Verstraete, Malvina Marku, Marcin Domagala, Helene Arduin, Jean-Jacques Fournié, Loic Ysebaert, Mary Poupot and Vera Pancaldi
6862P206-MAn interpretable Graph Convolutional Network for predicting disease-causing genes involved in SARS-CoV-2 infection.Samuele Firmani, Valter Bergant, Christoph Ogris, Annalisa Marsico and Andreas Pichlmair
7242P207-MBetween viral targets and differentially expressed genes in viral infections: the sweet spot of disease mechanisms for therapeutic interventionCarme Zambrana, Sam Windels, Noel Malod-Dognin and Nataša Pržulj
9762P208-MBioinformatic analysis of prescription patterns and drug combinations of patients under peritoneal dialysis treatmentMichail Evgeniou, Fabian Eibensteiner, Klaus Kratochwill and Paul Perco
5292P209-MBiologically informed neural network identifies Unfolded Protein Response as key pathway in critical COVID-19George Gavriilidis, Stella Dimitsaki, Fotis Psomopoulos and Vasileios Vasileiou
6265P210-MChanging terpenoid biosynthesis in rice through synthetic biologyOriol Basallo, Rui Alves and Ester Vilaprinyo
1234P211-MCharacterising Alternative Splicing Effects to Protein Interaction Networks with LINDAEnio Gjerga and Christoph Dieterich
1680P212-MComparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq dataDaniel Dimitrov and Julio Saez-Rodriguez
6047P213-MComposing and organizing metabolic model perturbations and constraint systems with COBREXA.jlMiroslav Kratochvíl, St Elmo Wilken, Laurent Heirendt, Reinhard Schneider, Christophe Trefois and Wei Gu
9793P214-MComputational prediction of time-course drug transcriptomic responsesMichio Iwata and Yoshihiro Yamanishi
8268P215-MConstruction of the cystic fibrosis biological network from the meta-analysis of transcriptomic studiesMatthieu Najm, Loredana Martignetti, Matthieu Cornet, Mairead Aubert, Isabelle Sermet-Gaudelus, Laurence Calzone and Véronique Stoven
437P216-MContext-specific investigations of combined miRNA effects with DIANA-miRPath v4.0Spyros Tastsoglou, Giorgos Skoufos, Marios Miliotis, Dimitra Karagkouni, Ioannis Koutsoukos, Anna Karavangeli, Filippos Kardaras and Artemis Hatzigeorgiou
8628P217-MCoupling of poro-aniso-hyperelastic and solute transport finite element models in a High-Performance Computing framework, for the study of Intervertebral Disc DegenerationDimitrios Lialios, Mariano Vazquez, Beatriz Eguzkitza, Eva Casoni and Maria Paola Ferri
5451P218-MDEPI v3: A systems biology and artificial intelligence based patient stratification and drug positioning platform for neurodevelopmental disordersLaura Pérez-Cano, Francesco Sirci, Igor Ariz-Extreme, Daniel Boloc, Sara Azidane, José Hidalgo, Rubén Sabido, Lynn Durham and Emre Guney
4796P219-MDrDimont: Explainable drug response prediction from differential analysis of multi-omics networksPauline Hiort, Julian Hugo, Justus Zeinert, Nataniel Müller, Spoorthi Kashyap, Jagath C. Rajapakse, Francisco Azuaje, Bernhard Y. Renard and Katharina Baum
3375P220-MEstimating Strengths of Causal Interactions for Gene Regulatory Networks in YeastAdriaan Ludl, Tom Michoel and Mariyam Khan
4239P221-MEthanol-induced sex-based differences in the extracellular vesicles lipidomeCarla Perpiñá-Clérigues, José F. Català-Senent, Susana Mellado, Consuelo Guerri, María Pascual and Francisco García-García
2978P222-MEvaluation of machine-learning methods using diverse representations and feature selection techniques for cell type annotation in single-cell transcriptomics dataHyojin Kim, Rafael Kramann and Sikander Hayat
6941P223-MFlexible nets to optimize antibody production in chinese hamster ovary cellsTeresa Joven, Jorge Lázaro, Jorge Júlvez, Nicole Borth, Diana Széliová and Jürgen Zanghellini
7611P224-MGALLANT: A standardized workflow for multi strain Genome-scale metabolic modeling.David San León Granado and Juan Nogales Enrique
6429P225-MGene-essentiality based drug signature helps repurposing non-cancer drugsJing Tang and Wenyu Wang
4550P226-MGuiding CAR T cell experimental design using probabilistic graphical modelsAlice Driessen, Rocío Castellanos Rueda, Constance le Gac, Nicolas Deutschman, Sai Reddy and Maria Rodriguez Martinez
7673P227-MHybrid system based gene regulation models of circadian cyclesLelde Lace, Gatis Melkus, Karlis Cerans and Juris Viksna
1478P228-MIdentification of transcriptional network disruptions associated to drug resistance in cancer with TraReCharles Blatti, Jesús de la Fuente, Huanyao Gao, Irene Marín Goñi, Zikun Chen, Sihai Zao, Winston Tan, Richard Weinshilboum, Krishna Kalari, Liewei Wang and Mikel Hernaez
9741P229-MIdentifying key multifunctional components shared by critical cancer and normal liver pathways via sparseGMMShaimaa Bakr, Kevin Brennan, Pritam Mukherjee, Josepmaria Argemi, Mikel Hernaez and Olivier Gevaert
3509P230-MImage-based simulation of morphogen gradient formation during zebrafish epiboly.Justina Stark, Rohit Krishnan Harish, Michael Brand and Ivo F. Sbalzarini
9046P231-MImplementation of cellular transport mechanisms within a multiscale simulation frameworkOthmane Hayoun-Mya, Arnau Montagud, Miguel Ponce-de-Leon and Alfonso Valencia
5320P232-MImproving xylose-fermenting yeast for 2G ethanol production via constraint-based modeling combined with omics data analysisLucas Carvalho, Vítor Pereira, Guido Araujo, Marcelo Carazzolle, Gonçalo A. G. Pereira and Miguel Rocha
4036P233-MInferring biologically relevant molecular tissue substructures by agglomerative clustering of digitized spatial transcriptomes with multilayerMarco Antonio Mendoza Parra and Julien Moehlin
6455P234-MInferring pathway activities from gene expression data using perturbation transcription profiles of the LINCS-L1000 datasetBence Szalai, Szabolcs Hetey, Péter Szikora, Kristóf Szalay and Dániel V Veres
8148P235-MIn-silico perturbation of transcription factors in a deep model of gene expression can predict tissue-specific regulationYuhu Liang, Viktoria Schuster, Thilde Terkelsen and Anders Krogh
8328P236-MIntegrating and mining time-dependent single-cell RNA-seq data: Parkinson’s disease applicationKatarina Mihajlovic, Gaia Ceddia, Noël Malod-Dognin, Gabriela Novak, Alexander Skupin, Dimitrios Kyriakis and Nataša Pržulj
2151P237-MISMARA: completely automated inference of gene regulatory networks from high-throughput data.Piotr Balwierz, Mikhail Pachkov, Phil Arnold, Andreas Gruber, Mihaela Zavolan and Erik van Nimwegen
5700P238-MIsoform-level quantification for single-cell RNA sequencingLu Pan, Huy Dinh, Yudi Pawitan and Trung Nghia Vu
5565P239-MLearning and reasoning with Bayesian networks to reconstruct cell signalling networks and automate hypothesis generation from phosphoproteomics dataMagdalena Huebner, Conrad Bessant and Pedro Cutillas
8993P198-TLeveraging multi-omic network embeddings to attain mechanistic insights into acute-on-chronic liver failureMatthias Fabian Meyer-Bender, Pia Erdoesi, Maren Büttner, Ioannis Deligiannis, Rizqah Kamies, Ersin Karatayli, Matthias Ebert, Frank Lammert, Christine von Törne, Stefanie Hauck, Celia P. Martinez-Jimenez, Nikola Mueller, Steven Dooley, Michael Menden, Seddik Hammad and Christoph Ogris
5526P199-TLeveraging systems biology and machine learning for automatic drug repurposing in the rare disease landscapeMarina Esteban, Carlos Loucera, Maria Peña-Chilet and Joaquín Dopazo
4218P200-TLongitudinal analysis of biological age (Phenoage) in UKBiobank participants reveals key factors driving ageing trajectoriesLaura Bravo, Victor Cardoso, John William, Dominic Russ, Samantha Pendleton, Furqan Aziz, Archana Sharma-Oates, Animesh Acharjee, Georgios Gkoutos and Janet Lord
4759P201-TMachine learning for functional reconstruction and analysis of Biochemical interactions controlling Colorectal cancer phenotypesVictor Olorunshola, Ian Overton, Sandra Van Schaeybroeck, Alan Murphy and Erola Pairo-Castineira
9295P202-TMathematically mapping the network of cells in the tumor microenvironmentM. van Santvoort, Ó. Lapuente-Santana, F. Finotello, W.L.F. van der Hoorn and F. Eduati
8530P203-TMetabolic Atlas – exploration and visualization of metabolic networks for model organismsMihail Anton, Nanjiang Shu, Ingrid Hyltander, Malin Klang, Per Johnsson, Shan Huang, L. Thomas Svensson and Jens Nielsen
161P204-TMetabolic Reprogramming in Rheumatoid Arthritis Synovial Fibroblast: a Hybrid Modeling ApproachSahar Aghakhani, Sylvain Soliman and Anna Niarakis
7952P205-TmiRarmature: a time series analysis pipeline for paired miRNA and RNA-seq data reveals new regulatory dynamicsRanjan Kumar Maji, Ariane Fischer, Martin C. Simon, Stefanie Dimmeler and Marcel H. Schulz
3537P206-TModeling the metabolic switch in Ewing Sarcoma from single-cell transcriptomic profilesMarianyela Petrizzelli and Andrei Zinovyev
1213P207-TMolecular cross-talk communication between Intermuscular Adipose Tissue and Skeletal Muscle under progressing Insulin ResistanceAmare Wolide and Dominik Lutter
8056P208-TMulti-modal based predictions of vaccine-induced immune responses.Fabio Affaticati, Abdulkader Azouz, Esther Bartholomeus, Benson Ogunjimi, Stanislas Goriely, Kris Laukens and Pieter Meysman
1194P209-TMultimodal Synthetic Lethality Prediction in CancerYasin Tepeli, Colm Seale and Joana P. Gonçalves
9944P210-TMulti-Omics Visible Drug Activity prediction, interpreting the biological processes underlying drug sensitivityLuigi Ferraro, Giovanni Scala and Michele Ceccarelli
3395P211-TMultiscale model of the different modes of invasionMarco Ruscone, Arnau Montagud, Philippe Chavrier, Olivier Destaing, Andrei Zinovyev, Emmanuel Barillot, Vincent Noel and Laurence Calzone
5883P212-TNetwork analysis of Aicardi-Goutières syndrome-related genes – a systems biology approachGerda Cristal Villalba Silva and Shiaw-Yih Lin
4921P213-TNetwork medicine-based gene prioritization in Intervertebral Disc Degeneration (IDD)Francesco Gualdi, Janet Piñero and Baldomero Oliva
9712P214-TNetwork-based driver identification with GoNeticSimon Isphording, Giles Miclotte and Kathleen Marchal
1973P215-TNovel systemic approach using comorbid phenotype clusters to propose disease-causing genes in undiagnosed patientsJosé Córdoba-Caballero, Pedro Seoane-Zonjic, James R. Perkins, Elena Rojano and Juan A. G. Ranea
4592P216-TNumerical approaches for the rapid analysis of prophylactic efficacy against HIVLanxin Zhang, Junyu Wang and Max von Kleist
5411P217-TOmic fold changes clustering and network inference to study the radiation response of endothelial cellsPolina Arsenteva, Vincent Paget, Olivier Guipaud, Fabien Milliat, Hervé Cardot and Mohamed Amine Benadjaoud
8074P218-TPatient stratification reveals the molecular basis of comorbiditiesBeatriz Urda-García, Jon Sánchez-Valle, Rosalba Lepore and Alfonso Valencia
8785P219-TPredicting EDC mode of action from toxicogenomics data using EDToxArindam Ghosh, Amirhossein Sakhteman, Raghavendra Mysore, Einari Niskanen, Thomas Darde, Pierre Daligaux, Christophe Chesné, Jorma Palvimo and Vittorio Fortino
687P220-TPrediction Of Shared Intratumor Transcriptional Heterogeneity From Bulk Cancer Transcriptomic DataAgnieszka Kraft and Valentina Boeva
4320P221-TReactome disease association overlayEliot Ragueneau, Deng Chuan, Krishna Tiwari, Chuqiao Gong, Guilherme Viteri and Henning Hermjakob
6186P222-TRedRedundance: A web app to summarize the results of functional enrichment analyzes for one or multiple gene listsMireia Ferrer, Esther Camacho, Berta Miró, Angel Blanco and Alex Sanchez
3146P223-TscRNA-Seq based drug repurposing for targeting alveolar regeneration in idiopathic pulmonary fibrosisAnika Liu, Joo-Hyeon Lee, Andreas Bender and Namshik Han
1674P224-TSimulation of ground truth interaction networks from microbial community modelAda Rossato, Marco Cappellato, Nora Nikoloska, Giacomo Baruzzo and Barbara Di Camillo
3390P225-TSingle-cell multi-omics heterogenous multilayer network to infer gene regulatory mechanismsIna Maria Deutschmann, Rémi Trimbour and Laura Cantini
6756P226-TspongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscapeFabio Boniolo, Markus Daniel Hoffmann, Norman Roggendorf, Bahar Tercan, Jan Baumbach, Mauro Antônio Castro, A. Gordon Robertson, Dieter Saur and Markus List
5329P227-TStochastic Model of Intra-Tumor Heterogeneity (SMITH)Adam Streck, Tom Kaufmann and Roland F. Schwarz
9633P228-TSTOCHASTIC SIMULATION OF SARS-COV-2 SPREADING AND EVOLUTION ACCOUNT FOR WHITHIN HOST DYNAMICS (SIMPLICITY).Pietro Gerletti, Max Von Kleist, Sofia Paraskevopoulou, Matthew Huska and Stephan Fuchs
4613P229-TSystematic Analysis of Alternative Splicing in Time Course Data of SARS-Cov2 infection development using SpyconeChit Tong Lio, Zakaria Louadi, Amit Fenn, Jan Baumbach, Olga Tsoy, Tim Kacprowski and Markus List
1218P230-TThe sample size value in Network Medicine: an application of gene co-expression networksJoaquim Aguirre-Plans, Bingsheng Chen, Deisy Morselli Gysi and Albert-Laszlo Barabasi
9847P231-TTopological analysis as a tool for detection of abnormalities in protein-protein interaction dataAlicja Nowakowska and Malgorzata Kotulska
4430P232-TTowards a community-driven benchmark: PerMedCoE prepares a three agent-based modelling frameworks comparison.Thaleia Ntiniakou, Arnau Montagud and Alfonso Valencia
9434P233-TTowards a data-driven network inference model of interactions between immune and cancer cells in Chronic Lymphocytic LeukaemiaMalvina Marku, Hugo Chenel, Julie Bordenave, Nina Verstraete, Leila Khajavi, Flavien Raynal and Vera Pancaldi
4707P234-TTracking pathway activity in pseudotimePriyansh Srivastava, Stefan Götz and Ana Conesa
378P235-TTumor microenvironment evolution simulated through a hybrid Multi-Agent Spatio-Temporal model informed using sequencing dataMikele Milia, Giulia Cesaro, Giacomo Baruzzo, Giovanni Finco, Francesco Morandini, Alessio Lazzarini, Piergiorgio Alotto, Noel Filipe da Cunha Carvalho de Miranda, Zlatko Trajanoski, Francesca Finotello and Barbara Di Camillo
9578P236-TUsing neural networks to decipher non-equilibrium states of cell differentiation processSusan Ghaderi, Alexander Skupin and Yves Moreau
Climate Crisis and Health

Climate Crisis and Health

Ref.Poster NºTitleAuthors
8710P240-MA metabolomic approach to understand the metabolic link between obesity and type 2 diabetesQiuling Dong, Sapna Sharma and Harald Grallert
4359P241-MAPPLYING HUMAN EPIGENETIC INTER-VARIABILITY FOR PERSONALIZED NUTRITION STRATEGIES IN CANCER PATIENTSTeresa Laguna, Marco Garranzo, Marta Gómez de Cedrón, Ana Ramírez de Molina and Enrique Carrillo de Santa Pau
7907P242-MAutomated Diagnostic System for Medical Treatment of Infectious Diseases using Causal transfer learning and biological knowledge graph embeddingSakhaa Alsaedi, Katsuhiko Mineta, Xin Gao and Takashi Gojobori
8386P243-MCharacterization Of The Latent Resistome In External And Host-associated EnvironmentsJuan Inda-Díaz, David Lund, Anna Johnning, Marcos Parras-Moltó, Johan Bengtsson-Palme and Erik Kristiansson
5869P244-MDeclaraMID: A Declarative Framework for Modeling Infectious DiseasesSebastiaan Weytjens, Ann Nowé, Niel Hens and Pieter Libin
2209P245-MDeep Learning to differentiate between images of burnt and normal skinKirsty Smith, Sharmila Jivan, Ajay Mahajan, Khaled Jumah and Krzysztof Poterlowicz
9800P246-MEDAM and EDAM Geo: an ontology for data-intensive, interdisciplinary geo- and biosciencesLucie Lamothe, Mads Kierkegaard, Melissa Black, Hager Eldakroury, Veit Schwämmle, Hamish Struthers, Bryan Brancotte, Kessy Abarenkov, Olga Silantyeva, Jean Iaquinta, Jon Ison, Jonathan Karr, Anne Fouilloux, Alban Gaignard, Hervé Ménager, Matúš Kalaš and And The Edam Community
8910P237-TEvaluating COVID-19 vaccine allocation policies using Bayesian m-top explorationAlexandra Cimpean, Lander Willem, Timothy Verstraeten, Niel Hens, Ann Nowé and Pieter Libin
3303P238-TExploring the Pareto front of multi-objective COVID-19 mitigation policies using reinforcement learningMathieu Reymond, Conor F Hayes, Lander Willem, Roxana Radulescu, Steven Abrams, Diederik M. Roijers, Enda Howley, Patrick Mannion, Niel Hens, Ann Nowé and Pieter Libin
5817P239-TFeed Your Model More Protein: Novel features based on viral protein composition and predicted interaction improve and slimline models of viral zoonosesMatt Arnold, Simon Crouzet, Daniel Streicker and Simon Babayan
7396P240-TFOODRUGS: AN EXPLORATORY MINING WEB APPLICATION FOR FOOD – DRUG INTERACTIONSMarco Garranzo, Teresa Laguna Lobo, David Pérez Serrano, Blanca Lacruz Pleguezuelos, María Isabel Espinosa, Ana Ramírez de Molina and Enrique Carrillo-De Santa Pau
3186P241-TProviding a dashboard for monitoring effects of contact behavior on the spread of SARS-CoV-2Paul Chevelev, Richard Schiemenz, Ferdous Nasri, Richard Pastor, Bernhard Y Renard and Sten Rüdiger
3293P242-TRooting virus phylogenies using UNREST and the general Markov modelJose Nikhil Teja Dasari, Prabhav Kalaghatgi and Martin Vingron
7293P243-TSimilarity network approach on transcriptomic data of patients with systemic infectious diseases.Francesco Messina, Carolina Venditti, Carla Nisii, Carla Fontana and Alessandro Capone
345P244-TTCR-epitope recognition models to untangle unique and cross-reactive T-cell immunity in COVID-19 patientsAnna Postovskaya, Alexandra Vujkovic, Tessa de Block, Lida van Petersen, Maartje van Frankenhuijsen, Isabel Brosius, Emannuel Bottieau, Christophe Van Dijck, Caroline Theunissen, Sabrina van Ierssel, Erika Vlieghe, Esther Bartholomeus, Wim Adriaensen, Guido Vanham, Benson Ogunjimi, Koen Vercauteren, Kris Laukens and Pieter Meysman
Climate Crisis and Health


Ref.Poster NºTitleAuthors
9350P247-MAlternative splicing analysis benchmark with DICASTAmit Fenn, Olga Tsoy, Tim Faro, Fanny Roessler, Alexander Dietrich, Johannes Kersting, Zakaria Louadi, Chit Tong Lio, Uwe Völker, Jan Baumbach, Tim Kacprowski and Markus List
8514P248-MAttention-based Variation Graph Autoencoder for DTA Prediction on Multiplex Heterogeneous NetworkDimitrios Papadopoulos, Bin Liu, David Čechák and Grigorios Tsoumakas
2281P249-McellAssign: a small toolset to identify the cell types associated with methylation componentsReka Toth, Pavlo Lutsik, Christoph Plass and Petr V. Nazarov
3857P250-MCell-type identification via functional enrichment analysis of Single-cell RNA-seq dataMarta Benegas Coll and Stefan Götz
4354P251-MChIA-BERT: prediction of CTCF-mediated chromatin loops identified by Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) from DNA sequenceMateusz Chiliński and Dariusz Plewczynski
8613P252-MChoosing variant interpretation tools for clinical applications: context mattersXavier de la Cruz, Natàlia Padilla, Josu Aguirre, Selen Özkan, Casandra Riera and Lidia Feliubadaló
700P253-MCombined Quality Assessment of Different Long-Reads Sequencing MethodsEnrique Presa-Díez, Adolfo López-Cerdán and Stefan Götz
4478P254-MContinuous reference color scheme for genetic ancestry using CIELABFelix Pacheco, Mikaela Koutrouli, Karina Banasik, Lars Juhl Jensen and Søren Brunak
3671P255-MCROSTA: CROss-Species Transmissibility Analyser for Pathogen SequencesShan Tharanga, Eyyüb Selim Ünlü, Esra Büşra Işık, Muhammad Farhan Sjaugi and Mohammad Asif Khan
4052P256-MCurrent activities of the ELIXIR Machine Learning Focus GroupFotis Psomopoulos, Emidio Capriotti, Núria Queralt Rosinach, Machine Learning Focus Group Tasks Participants, Leyla Jael Castro and Silvio Tostto
7403P257-MDA4LT: an efficient computational method for cross-species label transfer from single cell dataRawan Olayan, Sergio Picart-Armada, Gregorio Alanis-Lobato, Francesc Fernandez-Albert, Timothy B Sackton and Stefano Patassini
6882P258-MfCAT – Assessing gene set completeness using domain-architecture aware targeted ortholog searchesVinh Tran and Ingo Ebersberger
6199P259-MFrankenSeq: A user-friendly and modular machine learning package for Single-cell RNA-Seq Cluster AnalysisEdward Agboraw and Quan Gu
3471P260-MFunctional Enrichment Analysis of Regulatory Elements with GeneCodis4Adrian Garcia-Moreno, Raul Lopez-Dominguez, Juan Antonio Villatoro-Garcia, Samuel Perez-Fernandez and Pedro Carmona-Saez
1741P261-MGeneHTracker: improving reproducibility and reusability of datasets based on gene identifiers.Hugo Guillen-Ramirez, Daniel Sanchez-Taltavull and Rory Johnson
5168P262-MImplications of phenotypic and functional heterogeneity in cancer cellsAsadullah and Shamik Sen
7281P263-MMathematica as a platform to develop tools for education, data representation, and analysis in epidemiologyRui Alves, Ester Vilaprinyo, Alberto Marin-Sanguino and Albert Sorribas
9084P245-TMicroNAP-web: A novel framework to characterize genomic and transcriptomic changes in engineered microbial strains based on Next Generation Sequencing data.Veronika Schusterbauer, Daniel Degreif, Christoph Schiklenk, Anton Glieder and Gerhard Thallinger
4055P246-TMinSizeML: An R Package to Estimate the Minimum Sample Size in Supervised Learning for ClassificationGuillermo Prol Castelo and Jose Luis Mosquera
4616P247-TMulti-Omics Analysis and Metabolic Network Construction in suberinization of cork oak.Nuria Mauri, Maria Verdum, Patrícia Jové, Ignacio Ontañon, Jordi Roselló, Vicente Ferreira and David Caparrós-Ruíz
9890P248-TNew algorithms for accurate and efficient de-novo genome assembly from long DNA sequencing readsDavid Guevara-Barrientos, Laura Natalia González García, Daniela Lozano, Juanita Gil, Maria Camila Hoyos, Christian Chavarro, Natalia Guayazan, Luis Chica, Maria Camila Buitrago, Edwin Bautista, Juan Camilo Bojacá, Miller Andrés Trujillo Achury and Jorge Duitama
2358P249-TOrganisation-wide data discovery at the European Bioinformatics InstituteMatthew Pearce, Prasad Basutkar, Ossama Edbali, Anton Kolesnikov, Henning Hermjakob and Rodrigo Lopez
8039P250-TPaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databasesTianyuan Liu, Pedro Salguero, Marko Petek, Carlos Martinez-Mira, Leandro Balzano-Nogueira, Živa Ramšak, Lauren McIntyre, Kristina Gruden, Sonia Tarazona and Ana Conesa
9080P251-TPredicting clinical response to immunotherapy in advanced melanomaMatthieu Genais, Bruno Ségui, Anne Montfort and Vera Pancaldi
6768P252-TSecured and annotated execution of workflows with WfExS-backendJosé M. Fernández, Laura Rodríguez-Navas and Salvador Capella-Gutierrez
1139P253-TSMASCH: Facilitating multi-appointment scheduling in longitudinal clinical research studies and care programs.Carlos Vega, Piotr Gawron, Jacek Lebioda, Valentin Grouès, Rejko Krüger, Reinhard Schneider and Venkata Satagopam
7424P254-TThe Bioinfo4Women Research Working Group on Sex and Gender Bias in Healthcare and AIAtia Cortés Martínez, Davide Cirillo, Maria José Rementeria and Nataly Buslon
9077P255-TThe ELIXIR::GA4GH CloudAlexander Kanitz, Justin Clark-Casey, Michael Crusoe, Gavin Farrell, Alvaro Gonzalez, Thanasis Vergoulis and Jonathan Tedds
9980P256-TThe Job Dispatcher sequence analysis tools services from EMBL-EBI in 2022Fábio Madeira, Joon Lee, Adrian Tivey, Nandana Madhusoodanan, Sarah Butcher and Rodrigo Lopez
1283P257-TThe Service Collections of the ELIXIR Rare Disease CommunityEmidio Capriotti, David Salgado, Friederike Ehrhart, Allegra Via, Claudio Carta, Marko Vidak, Rare Disease Community Contributors And Work Package Leaders, Marco Roos and Sergi Beltran
6207P258-TVaRHC: an R package for semi-automate ACMG/AMP variant classification on hereditary cancer genes according to gene-specific ClinGen guidelinesElisabet Munté, Lidia Feliubadaló, Marta Pineda, Eva Tornero, Maria Isabel González-Acosta, Carla Roca, Jose Marcos Moreno-Cabrera, Concepción Lázaro and Jose Luis Mosquera
4360P259-TWhole-genome sequencing analysis of food enzyme products reveals contaminations with genetically modified microorganism of related originJolien D’Aes, Marie-Alice Fraiture, Bert Bogaerts, Sigrid C.J. De Keersmaecker, Nancy H.C. Roosens and Kevin Vanneste
9788P260-TWiNGS: Widely integrated NGS platform for federated genome analysisHaleh Chizari, Nasim Lalani Shabani, Nishkala Sattanathan, Geert Vandeweyer and Yves Moreau
Climate Crisis and Health


Ref.Poster NºTitleAuthors
9898P264-MBioinformatics core facility management training – availability and challengesEva Alloza, Ezgi Karaca, Salvador Capella-Gutiérrez, Cath Brooksbank and Patricia Carvajal-López
1053P265-MCommunity building and training in the EMBL Bio-IT projectRenato Alves and Lisanna Paladin
5405P266-MELIXIR-hCNV: Galaxy workflows and trainingKhaled Jumah, Katarzyna Kamienicka, Wolfgang Maier, David Salgado, Christophe Béroud, Michael Baudis, Steven Laurie, Tim Beck, Salvador Capella-Gutierrez, Björn Grüning and Krzysztof Poterlowicz
1143P267-MELIXIR-UK DaSH: A Fellowship of data stewardsXenia Perez Sitja, Robert Andrews, Sara Khalil, Branka Franicevic, Catherine Knox, Munazah Andrabi, Shoaib Sufi, Neil Hall, Susanna-Assunta Sansone, Carole Goble and Krzysztof Poterlowicz
9922P268-MGOBLET: Unite, inspire and equip Bioinformatics Trainers worldwideJavier De Las Rivas, Eija Korpelainen, Annette McGrath, Asif M. Khan and Celia W.G. van Gelder
145P261-TInvestigating Student Sense of Belonging in Biology and Computer ScienceShamima Runa, Brett Becker and Catherine Mooney
4223P262-TThe Bioinfo4Women International Pilot Mentoring Programme for Young ScientistsAlba Jene-Sanz, Olfat Khannous-Lleiffe, Othmane Hayoun-Mya, Maria Sopena-Rios, Mireia Codina-Tobías, Eva Alloza, Àtia Cortés and Maria José Rementeria
2690P263-TThe EOSC-Life Training programme as a tool for bringing together a community of practiceDaniel Thomas-Lopez, Rebecca Ludwig and Vera Matser
369P264-TThe new Community of Practice for Data Management/Data Stewardship TrainingHelena Schnitzer, Nils-Christian Lübke, Irena Maus, Tanja Dammann-Kalinowski, Robert Andrews, Alexia Cardona, Fatima Nazeefa, Celia van Gelder, Mijke Jetten, Brane L. Leskosek, Jessica Lindvall, Ana Portugal Melo, Wolmar Nyberg Åkerström, Krzysztof Poterlowicz, Olivier Sand, Andreas Tauch, Marko Vidak and Daniel Wibberg
3188P265-TThe new de.NBI / ELIXIR-DE training platform in 2022Daniel Wibberg, Nils Christian Lübke, Andreas Tauch and Helena Schnitzer